#include <stdio.h>
#include <assert.h>
#include <string.h>
#include <time.h>

#include "util.h"
#include "physical_types.h"
#include "vpr_types.h"
#include "globals.h"
#include "route_export.h"
#include "route_common.h"
#include "cluster_legality.h"
#include "cluster_placement.h"
#include "rr_graph.h"

static t_chunk rr_mem_ch = {NULL, 0, NULL};

/*static struct s_linked_vptr *rr_mem_chunk_list_head = NULL;
static int chunk_bytes_avail = 0;
static char *chunk_next_avail_mem = NULL;*/
static struct s_trace **best_routing;

/* nets_in_cluster: array of all nets contained in the cluster */
static int *nets_in_cluster; /* [0..num_nets_in_cluster-1] */
static int num_nets_in_cluster;
static int saved_num_nets_in_cluster;
static int curr_cluster_index;

static int ext_input_rr_node_index, ext_output_rr_node_index,
		ext_clock_rr_node_index, max_ext_index;
static int **saved_net_rr_terminals;
static float pres_fac;

/********************* Subroutines local to this module *********************/
static boolean is_net_in_cluster(INP int inet);

static void add_net_rr_terminal_cluster(int iblk_net,
		t_pb_graph_node * primitive, int ilogical_block,
		t_model_ports * model_port, int ipin);

static boolean breadth_first_route_net_cluster(int inet);

static void breadth_first_expand_trace_segment_cluster(
		struct s_trace *start_ptr, int remaining_connections_to_sink);

static void breadth_first_expand_neighbours_cluster(int inode, float pcost,
		int inet, boolean first_time);

static void breadth_first_add_source_to_heap_cluster(int inet);

static void alloc_net_rr_terminals_cluster(void);

static void mark_ends_cluster(int inet);

static float rr_node_intrinsic_cost(int inode);

/************************ Subroutine definitions ****************************/

static boolean is_net_in_cluster(INP int inet) {
	int i;
	for (i = 0; i < num_nets_in_cluster; i++) {
		if (nets_in_cluster[i] == inet) {
			return TRUE;
		}
	}
	return FALSE;
}

/* load rr_node for source and sinks of net if exists, return FALSE otherwise */
/* Todo: Note this is an inefficient way to determine port, better to use a lookup, worry about this if runtime becomes an issue */
static void add_net_rr_terminal_cluster(int iblk_net,
		t_pb_graph_node * primitive, int ilogical_block,
		t_model_ports * model_port, int ipin) {
	/* Ensure at most one external input/clock source and one external output sink for net */
	int i, net_pin;
	t_port *prim_port;
	const t_pb_type *pb_type;
	boolean found;

	int input_port;
	int output_port;
	int clock_port;

	input_port = output_port = clock_port = 0;

	pb_type = primitive->pb_type;
	prim_port = NULL;

	assert(pb_type->num_modes == 0);

	found = FALSE;
	/* TODO: This is inelegant design, I should change the primitive ports in pb_type to be input, output, or clock instead of this lookup */
	for (i = 0; i < pb_type->num_ports && !found; i++) {
		prim_port = &pb_type->ports[i];
		if (pb_type->ports[i].model_port == model_port) {
			found = TRUE;
		} else {
			if (prim_port->is_clock) {
				clock_port++;
				assert(prim_port->type == IN_PORT);
			} else if (prim_port->type == IN_PORT) {
				input_port++;
			} else if (prim_port->type == OUT_PORT) {
				output_port++;
			} else {
				assert(0);
			}
		}
	}
	assert(found);
	assert(ipin < prim_port->num_pins);
	net_pin = OPEN;
	if (prim_port->is_clock) {
		for (i = 1; i <= vpack_net[iblk_net].num_sinks; i++) {
			if (vpack_net[iblk_net].node_block[i] == ilogical_block
					&& vpack_net[iblk_net].node_block_port[i]
							== model_port->index
					&& vpack_net[iblk_net].node_block_pin[i] == ipin) {
				net_pin = i;
				break;
			}
		}
		assert(net_pin != OPEN);
		assert(rr_node[primitive->clock_pins[clock_port][ipin].pin_count_in_cluster].num_edges == 1);
		net_rr_terminals[iblk_net][net_pin] = rr_node[primitive->clock_pins[clock_port][ipin].pin_count_in_cluster].edges[0];
	} else if (prim_port->type == IN_PORT) {
		for (i = 1; i <= vpack_net[iblk_net].num_sinks; i++) {
			if (vpack_net[iblk_net].node_block[i] == ilogical_block
					&& vpack_net[iblk_net].node_block_port[i]
							== model_port->index
					&& vpack_net[iblk_net].node_block_pin[i] == ipin) {
				net_pin = i;
				break;
			}
		}
		assert(net_pin != OPEN);
		assert(rr_node[primitive->input_pins[input_port][ipin].pin_count_in_cluster].num_edges == 1);
		net_rr_terminals[iblk_net][net_pin] = rr_node[primitive->input_pins[input_port][ipin].pin_count_in_cluster].edges[0];
	} else if (prim_port->type == OUT_PORT) {
		i = 0;
		if (vpack_net[iblk_net].node_block[i] == ilogical_block
				&& vpack_net[iblk_net].node_block_port[i] == model_port->index
				&& vpack_net[iblk_net].node_block_pin[i] == ipin) {
			net_pin = i;
		}
		assert(net_pin != OPEN);
		net_rr_terminals[iblk_net][net_pin] =
				primitive->output_pins[output_port][ipin].pin_count_in_cluster;
	} else {
		assert(0);
	}
}

void reload_ext_net_rr_terminal_cluster(void) {
	int i, j, net_index;
	boolean has_ext_sink, has_ext_source;
	int curr_ext_output, curr_ext_input, curr_ext_clock;

	curr_ext_input = ext_input_rr_node_index;
	curr_ext_output = ext_output_rr_node_index;
	curr_ext_clock = ext_clock_rr_node_index;

	for (i = 0; i < num_nets_in_cluster; i++) {
		net_index = nets_in_cluster[i];
		has_ext_sink = FALSE;
		has_ext_source = (boolean)
				(logical_block[vpack_net[net_index].node_block[0]].clb_index
						!= curr_cluster_index);
		if (has_ext_source) {
			/* Instantiate a source of this net */
			if (vpack_net[net_index].is_global) {
				net_rr_terminals[net_index][0] = curr_ext_clock;
				curr_ext_clock++;
			} else {
				net_rr_terminals[net_index][0] = curr_ext_input;
				curr_ext_input++;
			}
		}
		for (j = 1; j <= vpack_net[net_index].num_sinks; j++) {
			if (logical_block[vpack_net[net_index].node_block[j]].clb_index
					!= curr_cluster_index) {
				if (has_ext_sink || has_ext_source) {
					/* Only need one node driving external routing, either this cluster drives external routing or another cluster does it */
					net_rr_terminals[net_index][j] = OPEN;
				} else {
					/* External sink, only need to route once, externally routing will take care of the rest */
					net_rr_terminals[net_index][j] = curr_ext_output;
					curr_ext_output++;
					has_ext_sink = TRUE;
				}
			}
		}

		if (curr_ext_input > ext_output_rr_node_index
				|| curr_ext_output > ext_clock_rr_node_index
				|| curr_ext_clock > max_ext_index) {
			/* failed, not enough pins of proper type, overran index */
			assert(0);
		}
	}
}

void alloc_and_load_cluster_legality_checker(void) {
	best_routing = (struct s_trace **) my_calloc(num_logical_nets,
			sizeof(struct s_trace *));
	nets_in_cluster = (int *) my_malloc(num_logical_nets * sizeof(int));
	num_nets_in_cluster = 0;
	num_nets = num_logical_nets;

	/* inside a cluster, I do not consider rr_indexed_data cost, set to 1 since other costs are multiplied by it */
	num_rr_indexed_data = 1;
	rr_indexed_data = (t_rr_indexed_data *) my_calloc(1, sizeof(t_rr_indexed_data));
	rr_indexed_data[0].base_cost = 1;

	/* alloc routing structures */
	alloc_route_static_structs();
	alloc_net_rr_terminals_cluster();
}

void free_cluster_legality_checker(void) {
	int inet;
	free(best_routing);
	free(rr_indexed_data);
	free_rr_node_route_structs();
	free_route_structs();
	free_trace_structs();

	free_chunk_memory(&rr_mem_ch);

	for (inet = 0; inet < num_logical_nets; inet++) {
		free(saved_net_rr_terminals[inet]);
	}
	free(net_rr_terminals);
	free(nets_in_cluster);
	free(saved_net_rr_terminals);
}

void alloc_and_load_rr_graph_for_pb_graph_node(
		INP t_pb_graph_node *pb_graph_node, INP const t_arch* arch, int mode) {

	int i, j, k, index;
	boolean is_primitive;

	is_primitive = (boolean) (pb_graph_node->pb_type->num_modes == 0);

	for (i = 0; i < pb_graph_node->num_input_ports; i++) {
		for (j = 0; j < pb_graph_node->num_input_pins[i]; j++) {
			index = pb_graph_node->input_pins[i][j].pin_count_in_cluster;
			rr_node[index].pb_graph_pin = &pb_graph_node->input_pins[i][j];
			rr_node[index].fan_in =
					pb_graph_node->input_pins[i][j].num_input_edges;
			rr_node[index].num_edges =
					pb_graph_node->input_pins[i][j].num_output_edges;
			rr_node[index].pack_intrinsic_cost = 1
					+ (float) rr_node[index].num_edges / 5 + ((float)j/(float)pb_graph_node->num_input_pins[i])/(float)10; /* need to normalize better than 5 and 10, bias router to use earlier inputs pins */
			rr_node[index].edges = (int *) my_malloc(
					rr_node[index].num_edges * sizeof(int));
			rr_node[index].switches = (short *) my_calloc(rr_node[index].num_edges,
					sizeof(short));
			rr_node[index].net_num = OPEN;
	        rr_node[index].vpack_net_num = OPEN; /* Xifan TANG: ensure a clear initialization */
			rr_node[index].prev_node = OPEN;
			rr_node[index].prev_edge = OPEN;
			if (mode == 0) { /* default mode is the first mode */
				rr_node[index].capacity = 1;
			} else {
				rr_node[index].capacity = 0;
			}
			for (k = 0; k < pb_graph_node->input_pins[i][j].num_output_edges;
					k++) {
				/* TODO: Intention was to do bus-based implementation here */
				rr_node[index].edges[k] =
						pb_graph_node->input_pins[i][j].output_edges[k]->output_pins[0]->pin_count_in_cluster;
				rr_node[index].switches[k] = arch->num_switches - 1; /* last switch in arch switch properties is a delayless switch */
				assert(
						pb_graph_node->input_pins[i][j].output_edges[k]->num_output_pins == 1);
			}
			rr_node[index].type = INTRA_CLUSTER_EDGE;
			if (is_primitive) {
				/* This is a terminating pin, add SINK node */
				assert(rr_node[index].num_edges == 0);
				rr_node[index].num_edges = 1;
				rr_node[index].edges = (int *) my_calloc(rr_node[index].num_edges, sizeof(int));
				rr_node[index].switches = (short *) my_calloc(rr_node[index].num_edges, sizeof(short));
				rr_node[index].edges[0] = num_rr_nodes;
				
				/* Create SINK node */
				rr_node[num_rr_nodes].pb_graph_pin = NULL;
				rr_node[num_rr_nodes].fan_in = 1;
				rr_node[num_rr_nodes].num_edges = 0;
				rr_node[num_rr_nodes].pack_intrinsic_cost = 1;
				rr_node[num_rr_nodes].edges = NULL;
				rr_node[num_rr_nodes].switches = NULL;
				rr_node[num_rr_nodes].net_num = OPEN;
				rr_node[num_rr_nodes].vpack_net_num = OPEN; /* Xifan TANG: ensure a clear initialization */
				rr_node[num_rr_nodes].prev_node = OPEN;
				rr_node[num_rr_nodes].prev_edge = OPEN;
				rr_node[num_rr_nodes].capacity = 1;
				rr_node[num_rr_nodes].type = SINK;					
				num_rr_nodes++;

				if(pb_graph_node->pb_type->class_type == LUT_CLASS) {
					/* LUTs are special, they have logical equivalence at inputs, logical equivalence is represented by a single high capacity sink instead of multiple single capacity sinks */
					rr_node[num_rr_nodes - 1].capacity = pb_graph_node->num_input_pins[i];					
					if(j != 0) {
						num_rr_nodes--;
						rr_node[index].edges[0] = num_rr_nodes - 1;
					}					
				}				
			}
		}
	}

	for (i = 0; i < pb_graph_node->num_output_ports; i++) {
		for (j = 0; j < pb_graph_node->num_output_pins[i]; j++) {
			index = pb_graph_node->output_pins[i][j].pin_count_in_cluster;
			rr_node[index].pb_graph_pin = &pb_graph_node->output_pins[i][j];
			rr_node[index].fan_in =
					pb_graph_node->output_pins[i][j].num_input_edges;
			rr_node[index].num_edges =
					pb_graph_node->output_pins[i][j].num_output_edges;
			rr_node[index].pack_intrinsic_cost = 1
					+ (float) rr_node[index].num_edges / 5; /* need to normalize better than 5 */
			rr_node[index].edges = (int *) my_malloc(
					rr_node[index].num_edges * sizeof(int));
			rr_node[index].switches = (short *) my_calloc(rr_node[index].num_edges,
					sizeof(short));
			rr_node[index].net_num = OPEN;
	        rr_node[index].vpack_net_num = OPEN; /* Xifan TANG: ensure a clear initialization */
			rr_node[index].prev_node = OPEN;
			rr_node[index].prev_edge = OPEN;
			if (mode == 0) { /* Default mode is the first mode */
				rr_node[index].capacity = 1;
			} else {
				rr_node[index].capacity = 0;
			}
			for (k = 0; k < pb_graph_node->output_pins[i][j].num_output_edges;
					k++) {
				/* TODO: Intention was to do bus-based implementation here */
				rr_node[index].edges[k] =
						pb_graph_node->output_pins[i][j].output_edges[k]->output_pins[0]->pin_count_in_cluster;
				rr_node[index].switches[k] = arch->num_switches - 1;
				assert(
						pb_graph_node->output_pins[i][j].output_edges[k]->num_output_pins == 1);
			}
			rr_node[index].type = INTRA_CLUSTER_EDGE;
			if (is_primitive) {
				rr_node[index].type = SOURCE;
			}
		}
	}

	for (i = 0; i < pb_graph_node->num_clock_ports; i++) {
		for (j = 0; j < pb_graph_node->num_clock_pins[i]; j++) {
			index = pb_graph_node->clock_pins[i][j].pin_count_in_cluster;
			rr_node[index].pb_graph_pin = &pb_graph_node->clock_pins[i][j];
			rr_node[index].fan_in =
					pb_graph_node->clock_pins[i][j].num_input_edges;
			rr_node[index].num_edges =
					pb_graph_node->clock_pins[i][j].num_output_edges;
			rr_node[index].pack_intrinsic_cost = 1
					+ (float) rr_node[index].num_edges / 5; /* need to normalize better than 5 */
			rr_node[index].edges = (int *) my_malloc(
					rr_node[index].num_edges * sizeof(int));
			rr_node[index].switches = (short *) my_calloc(rr_node[index].num_edges,
					sizeof(short));
			rr_node[index].net_num = OPEN;
	        rr_node[index].vpack_net_num = OPEN; /* Xifan TANG: ensure a clear initialization */
			rr_node[index].prev_node = OPEN;
			rr_node[index].prev_edge = OPEN;
			if (mode == 0) { /* default mode is the first mode (useful for routing */
				rr_node[index].capacity = 1;
			} else {
				rr_node[index].capacity = 0;
			}
			for (k = 0; k < pb_graph_node->clock_pins[i][j].num_output_edges;
					k++) {
				/* TODO: Intention was to do bus-based implementation here */
				rr_node[index].edges[k] =
						pb_graph_node->clock_pins[i][j].output_edges[k]->output_pins[0]->pin_count_in_cluster;
				rr_node[index].switches[k] = arch->num_switches - 1;
				assert(
						pb_graph_node->clock_pins[i][j].output_edges[k]->num_output_pins == 1);
			}
			rr_node[index].type = INTRA_CLUSTER_EDGE;
			if (is_primitive) {
				/* This is a terminating pin, add SINK node */
				assert(rr_node[index].num_edges == 0);
				rr_node[index].num_edges = 1;
				rr_node[index].edges = (int *) my_calloc(rr_node[index].num_edges, sizeof(int));
				rr_node[index].switches = (short *) my_calloc(rr_node[index].num_edges, sizeof(short));
				rr_node[index].edges[0] = num_rr_nodes;
				
				/* Create SINK node */
				rr_node[num_rr_nodes].pb_graph_pin = NULL;
				rr_node[num_rr_nodes].fan_in = 1;
				rr_node[num_rr_nodes].num_edges = 0;
				rr_node[num_rr_nodes].pack_intrinsic_cost = 1;
				rr_node[num_rr_nodes].edges = NULL;
				rr_node[num_rr_nodes].switches = NULL;
				rr_node[num_rr_nodes].net_num = OPEN;
	            rr_node[num_rr_nodes].vpack_net_num = OPEN; /* Xifan TANG: ensure a clear initialization */
				rr_node[num_rr_nodes].prev_node = OPEN;
				rr_node[num_rr_nodes].prev_edge = OPEN;
				rr_node[num_rr_nodes].capacity = 1;
				rr_node[num_rr_nodes].type = SINK;	
				num_rr_nodes++;
			}
		}
	}

	for (i = 0; i < pb_graph_node->pb_type->num_modes; i++) {
        /* Xifan Tang: we DO NOT build the rr_graph for those modes are disabled in packing */
        /*
        if (TRUE == pb_graph_node->pb_type->modes[i].disabled_in_packing) {
          continue;
        }
        */
		for (j = 0; j < pb_graph_node->pb_type->modes[i].num_pb_type_children;
				j++) {
			for (k = 0;
					k
							< pb_graph_node->pb_type->modes[i].pb_type_children[j].num_pb;
					k++) {
				alloc_and_load_rr_graph_for_pb_graph_node(
						&pb_graph_node->child_pb_graph_nodes[i][j][k], arch, i);
			}
		}
	}

}

void alloc_and_load_legalizer_for_cluster(INP t_block* clb, INP int clb_index,
		INP const t_arch *arch) {

	/**
	 * Structure: Model external routing and internal routing
	 * 
	 * 1.  Model external routing
	 *   num input pins == num external sources for input pins, fully connect them to input pins (simulates external routing)
	 *   num output pins == num external sinks for output pins, fully connect them to output pins (simulates external routing)
	 *   num clock pins == num external sources for clock pins, fully connect them to clock pins (simulates external routing)
	 * 2.  Model internal routing
	 * 
	 */
	/* make each rr_node one correspond with pin and correspond with pin's index pin_count_in_cluster */
	int i, j, k, m, index, pb_graph_rr_index;
	int count_pins;
	t_pb_type * pb_type;
	t_pb_graph_node *pb_graph_node;
	int ipin;

	/* Create rr_graph */
	pb_type = clb->type->pb_type;
	pb_graph_node = clb->type->pb_graph_head;
	num_rr_nodes = pb_graph_node->total_pb_pins + pb_type->num_input_pins
			+ pb_type->num_output_pins + pb_type->num_clock_pins;

	/* allocate memory for rr_node resources + additional memory for any additional sources/sinks, 2x is an overallocation but guarantees that there will be enough sources/sinks available */
	rr_node = (t_rr_node *) my_calloc(num_rr_nodes * 2, sizeof(t_rr_node));
	clb->pb->rr_graph = rr_node;

	alloc_and_load_rr_graph_for_pb_graph_node(pb_graph_node, arch, 0);

	curr_cluster_index = clb_index;

	/*   Alloc and load rr_graph external sources and sinks */
	ext_input_rr_node_index = pb_graph_node->total_pb_pins;
	ext_output_rr_node_index = pb_type->num_input_pins
			+ pb_graph_node->total_pb_pins;
	ext_clock_rr_node_index = pb_type->num_input_pins + pb_type->num_output_pins
			+ pb_graph_node->total_pb_pins;
	max_ext_index = pb_type->num_input_pins + pb_type->num_output_pins
			+ pb_type->num_clock_pins + pb_graph_node->total_pb_pins;

	for (i = 0; i < pb_type->num_input_pins; i++) {
		index = i + pb_graph_node->total_pb_pins;
		rr_node[index].type = SOURCE;
		rr_node[index].fan_in = 0;
		rr_node[index].num_edges = pb_type->num_input_pins;
		rr_node[index].pack_intrinsic_cost = 1
				+ (float) rr_node[index].num_edges / 5; /* need to normalize better than 5 */
		rr_node[index].edges = (int *) my_malloc(
				rr_node[index].num_edges * sizeof(int));
		rr_node[index].switches = (short *) my_calloc(rr_node[index].num_edges,
				sizeof(int));
		rr_node[index].capacity = 1;
	}

	for (i = 0; i < pb_type->num_output_pins; i++) {
		index = i + pb_type->num_input_pins + pb_graph_node->total_pb_pins;
		rr_node[index].type = SINK;
		rr_node[index].fan_in = pb_type->num_output_pins;
		rr_node[index].num_edges = 0;
		rr_node[index].pack_intrinsic_cost = 1
				+ (float) rr_node[index].num_edges / 5; /* need to normalize better than 5 */
		rr_node[index].capacity = 1;
	}

	for (i = 0; i < pb_type->num_clock_pins; i++) {
		index = i + pb_type->num_input_pins + pb_type->num_output_pins
				+ pb_graph_node->total_pb_pins;
		rr_node[index].type = SOURCE;
		rr_node[index].fan_in = 0;
		rr_node[index].num_edges = pb_type->num_clock_pins;
		rr_node[index].pack_intrinsic_cost = 1
				+ (float) rr_node[index].num_edges / 5; /* need to normalize better than 5 */
		rr_node[index].edges = (int *) my_malloc(
				rr_node[index].num_edges * sizeof(int));
		rr_node[index].switches = (short *) my_calloc(rr_node[index].num_edges,
				sizeof(int));
		rr_node[index].capacity = 1;
	}

	ipin = 0;
	for (i = 0; i < pb_graph_node->num_input_ports; i++) {
		for (j = 0; j < pb_graph_node->num_input_pins[i]; j++) {
			pb_graph_rr_index =
					pb_graph_node->input_pins[i][j].pin_count_in_cluster;
			for (k = 0; k < pb_type->num_input_pins; k++) {
				index = k + pb_graph_node->total_pb_pins;
				rr_node[index].edges[ipin] = pb_graph_rr_index;
				rr_node[index].switches[ipin] = arch->num_switches - 1;
			}
			rr_node[pb_graph_rr_index].pack_intrinsic_cost = MAX_SHORT; /* using an input pin should be made costly */
			ipin++;
		}
	}

	/* Must attach output pins to input pins because if a connection cannot fit using intra-cluster routing, it can also use external routing */
	for (i = 0; i < pb_graph_node->num_output_ports; i++) {
		for (j = 0; j < pb_graph_node->num_output_pins[i]; j++) {
			count_pins = pb_graph_node->output_pins[i][j].num_output_edges
					+ pb_type->num_output_pins + pb_type->num_input_pins;
			pb_graph_rr_index =
					pb_graph_node->output_pins[i][j].pin_count_in_cluster;
			rr_node[pb_graph_rr_index].edges = (int *) my_realloc(
					rr_node[pb_graph_rr_index].edges,
					(count_pins) * sizeof(int));
			rr_node[pb_graph_rr_index].switches = (short *) my_realloc(
					rr_node[pb_graph_rr_index].switches,
					(count_pins) * sizeof(int));

			ipin = 0;
			for (k = 0; k < pb_graph_node->num_input_ports; k++) {
				for (m = 0; m < pb_graph_node->num_input_pins[k]; m++) {
					index =
							pb_graph_node->input_pins[k][m].pin_count_in_cluster;
					rr_node[pb_graph_rr_index].edges[ipin
							+ pb_graph_node->output_pins[i][j].num_output_edges] =
							index;
					rr_node[pb_graph_rr_index].switches[ipin
							+ pb_graph_node->output_pins[i][j].num_output_edges] =
							arch->num_switches - 1;
					ipin++;
				}
			}
			for (k = 0; k < pb_type->num_output_pins; k++) {
				index = k + pb_type->num_input_pins
						+ pb_graph_node->total_pb_pins;
				rr_node[pb_graph_rr_index].edges[k + pb_type->num_input_pins
						+ pb_graph_node->output_pins[i][j].num_output_edges] =
						index;
				rr_node[pb_graph_rr_index].switches[k + pb_type->num_input_pins
						+ pb_graph_node->output_pins[i][j].num_output_edges] =
						arch->num_switches - 1;
			}
			rr_node[pb_graph_rr_index].num_edges += pb_type->num_output_pins
					+ pb_type->num_input_pins;
			rr_node[pb_graph_rr_index].pack_intrinsic_cost = 1
					+ (float) rr_node[pb_graph_rr_index].num_edges / 5; /* need to normalize better than 5 */
		}
	}

	ipin = 0;
	for (i = 0; i < pb_graph_node->num_clock_ports; i++) {
		for (j = 0; j < pb_graph_node->num_clock_pins[i]; j++) {
			for (k = 0; k < pb_type->num_clock_pins; k++) {
				index = k + pb_type->num_input_pins + pb_type->num_output_pins
						+ pb_graph_node->total_pb_pins;
				pb_graph_rr_index =
						pb_graph_node->clock_pins[i][j].pin_count_in_cluster;
				rr_node[index].edges[ipin] = pb_graph_rr_index;
				rr_node[index].switches[ipin] = arch->num_switches - 1;
			}
			ipin++;
		}
	}
 
	alloc_and_load_rr_node_route_structs();
	num_nets_in_cluster = 0;

}

void free_legalizer_for_cluster(INP t_block* clb, boolean free_local_rr_graph) {
	int i;

	free_rr_node_route_structs();
	if(free_local_rr_graph == TRUE) {
		for (i = 0; i < num_rr_nodes; i++) {
			if (clb->pb->rr_graph[i].edges != NULL) {
				free(clb->pb->rr_graph[i].edges);
			}
			if (clb->pb->rr_graph[i].switches != NULL) {
				free(clb->pb->rr_graph[i].switches);
			}
		}
		free(clb->pb->rr_graph);
	}
}

void reset_legalizer_for_cluster(t_block *clb) {
	int i;
	for (i = 0; i < num_nets_in_cluster; i++) {
		free_traceback(nets_in_cluster[i]);
		trace_head[nets_in_cluster[i]] = best_routing[nets_in_cluster[i]];
		free_traceback(nets_in_cluster[i]);
		best_routing[nets_in_cluster[i]] = NULL;
	}

	free_rr_node_route_structs();
	num_nets_in_cluster = 0;
	saved_num_nets_in_cluster = 0;
}

/** 
 * 
 * internal_nets: index of nets to route [0..num_internal_nets - 1]
 */
boolean try_breadth_first_route_cluster(void) {

	/* Iterated maze router ala Pathfinder Negotiated Congestion algorithm,  *
	 * (FPGA 95 p. 111).  Returns TRUE if it can route this FPGA, FALSE if   *
	 * it can't.                                                             */

	/* For different modes, when a mode is turned on, I set the max occupancy of all rr_nodes in the mode to 1 and all others to 0 */
	/* TODO: There is a bug for route-throughs where edges in route-throughs do not get turned off because the rr_edge is in a particular mode but the two rr_nodes are outside */

	boolean success, is_routable;
	int itry, inet, net_index;
	struct s_router_opts router_opts;

    /* Xifan TANG: Count runtime for routing in packing stage */
    clock_t begin, end;

    begin = clock();

	/* Usually the first iteration uses a very small (or 0) pres_fac to find  *
	 * the shortest path and get a congestion map.  For fast compiles, I set  *
	 * pres_fac high even for the first iteration.                            */

	/* sets up a fast breadth-first router */
	router_opts.first_iter_pres_fac = 10;
	router_opts.max_router_iterations = 20;
	router_opts.initial_pres_fac = 10;
	router_opts.pres_fac_mult = 2;
	router_opts.acc_fac = 1;

	reset_rr_node_route_structs(); /* Clear all prior rr_graph history */

	pres_fac = router_opts.first_iter_pres_fac;

	for (itry = 1; itry <= router_opts.max_router_iterations; itry++) {
		for (inet = 0; inet < num_nets_in_cluster; inet++) {
			net_index = nets_in_cluster[inet];

			pathfinder_update_one_cost(trace_head[net_index], -1, pres_fac);

			is_routable = breadth_first_route_net_cluster(net_index);

			/* Impossible to route? (disconnected rr_graph) */

			if (!is_routable) {
				/* TODO: Inelegant, can be more intelligent */
				vpr_printf(TIO_MESSAGE_INFO, "Failed routing net %s\n", vpack_net[net_index].name);
				vpr_printf(TIO_MESSAGE_INFO, "Routing failed. Disconnected rr_graph.\n");
				return FALSE;
			}

			pathfinder_update_one_cost(trace_head[net_index], 1, pres_fac);

		}

		success = feasible_routing();
		if (success) {
            /* End of packing routing */
            end = clock();
            /* accumulate the runtime for pack routing */
#ifdef CLOCKS_PER_SEC
            pack_route_time += (float)(end - begin)/ CLOCKS_PER_SEC; 
#else
            pack_route_time += (float)(end - begin)/ CLK_PER_SEC; 
#endif
            /* vpr_printf(TIO_MESSAGE_INFO, "Updated: Packing routing took %g seconds\n", pack_route_time); */
			return (TRUE);
		}

		if (itry == 1)
			pres_fac = router_opts.initial_pres_fac;
		else
			pres_fac *= router_opts.pres_fac_mult;

		pres_fac = std::min(pres_fac, static_cast<float>(HUGE_POSITIVE_FLOAT / 1e5));

		pathfinder_update_cost(pres_fac, router_opts.acc_fac);
	}
    /* End of packing routing */
    end = clock();
    /* accumulate the runtime for pack routing */
#ifdef CLOCKS_PER_SEC
    pack_route_time += (float)(end - begin)/ CLOCKS_PER_SEC; 
#else
    pack_route_time += (float)(end - begin)/ CLK_PER_SEC; 
#endif
    /* vpr_printf(TIO_MESSAGE_INFO, "Updated: Packing routing took %g seconds\n", pack_route_time); */

	return (FALSE);
}

static boolean breadth_first_route_net_cluster(int inet) {

	/* Uses a maze routing (Dijkstra's) algorithm to route a net.  The net       *
	 * begins at the net output, and expands outward until it hits a target      *
	 * pin.  The algorithm is then restarted with the entire first wire segment  *
	 * included as part of the source this time.  For an n-pin net, the maze     *
	 * router is invoked n-1 times to complete all the connections.  Inet is     *
	 * the index of the net to be routed.                                *
	 * If this routine finds that a net *cannot* be connected (due to a complete *
	 * lack of potential paths, rather than congestion), it returns FALSE, as    *
	 * routing is impossible on this architecture.  Otherwise it returns TRUE.   */

	int i, inode, prev_node, remaining_connections_to_sink;
	float pcost, new_pcost;
	struct s_heap *current;
	struct s_trace *tptr;
	boolean first_time;

	free_traceback(inet);
	breadth_first_add_source_to_heap_cluster(inet);
	mark_ends_cluster(inet);

	tptr = NULL;
	remaining_connections_to_sink = 0;

	for (i = 1; i <= vpack_net[inet].num_sinks; i++) { /* Need n-1 wires to connect n pins */

		/* Do not connect open terminals */
		if (net_rr_terminals[inet][i] == OPEN)
			continue;
		/* Expand and begin routing */
		breadth_first_expand_trace_segment_cluster(tptr,
				remaining_connections_to_sink);
		current = get_heap_head();

		if (current == NULL) { /* Infeasible routing.  No possible path for net. */
			reset_path_costs(); /* Clean up before leaving. */
			return (FALSE);
		}

		inode = current->index;

		while (rr_node_route_inf[inode].target_flag == 0) {
			pcost = rr_node_route_inf[inode].path_cost;
			new_pcost = current->cost;
			if (pcost > new_pcost) { /* New path is lowest cost. */
				rr_node_route_inf[inode].path_cost = new_pcost;
				prev_node = current->u.prev_node;
				rr_node_route_inf[inode].prev_node = prev_node;
				rr_node_route_inf[inode].prev_edge = current->prev_edge;
				first_time = FALSE;

				if (pcost > 0.99 * HUGE_POSITIVE_FLOAT) /* First time touched. */{
					add_to_mod_list(&rr_node_route_inf[inode].path_cost);
					first_time = TRUE;
				}

				breadth_first_expand_neighbours_cluster(inode, new_pcost, inet,
						first_time);
			}

			free_heap_data(current);
			current = get_heap_head();

			if (current == NULL) { /* Impossible routing. No path for net. */
				reset_path_costs();
				return (FALSE);
			}

			inode = current->index;
		}

		rr_node_route_inf[inode].target_flag--; /* Connected to this SINK. */
		remaining_connections_to_sink = rr_node_route_inf[inode].target_flag;
		tptr = update_traceback(current, inet);
		free_heap_data(current);
	}

	empty_heap();
	reset_path_costs();
	return (TRUE);
}

static void breadth_first_expand_trace_segment_cluster(
		struct s_trace *start_ptr, int remaining_connections_to_sink) {

	/* Adds all the rr_nodes in the traceback segment starting at tptr (and     *
	 * continuing to the end of the traceback) to the heap with a cost of zero. *
	 * This allows expansion to begin from the existing wiring.  The            *
	 * remaining_connections_to_sink value is 0 if the route segment ending     *
	 * at this location is the last one to connect to the SINK ending the route *
	 * segment.  This is the usual case.  If it is not the last connection this *
	 * net must make to this SINK, I have a hack to ensure the next connection  *
	 * to this SINK goes through a different IPIN.  Without this hack, the      *
	 * router would always put all the connections from this net to this SINK   *
	 * through the same IPIN.  With LUTs or cluster-based logic blocks, you     *
	 * should never have a net connecting to two logically-equivalent pins on   *
	 * the same logic block, so the hack will never execute.  If your logic     *
	 * block is an and-gate, however, nets might connect to two and-inputs on   *
	 * the same logic block, and since the and-inputs are logically-equivalent, *
	 * this means two connections to the same SINK.                             */

	struct s_trace *tptr, *next_ptr;
	int inode, sink_node, last_ipin_node;

	tptr = start_ptr;

	if (remaining_connections_to_sink == 0) { /* Usual case. */
		while (tptr != NULL) {
			node_to_heap(tptr->index, 0., NO_PREVIOUS, NO_PREVIOUS, OPEN, OPEN);
			tptr = tptr->next;
		}
	}

	else { /* This case never executes for most logic blocks. */

		/* Weird case.  Lots of hacks. The cleanest way to do this would be to empty *
		 * the heap, update the congestion due to the partially-completed route, put *
		 * the whole route so far (excluding IPINs and SINKs) on the heap with cost  *
		 * 0., and expand till you hit the next SINK.  That would be slow, so I      *
		 * do some hacks to enable incremental wavefront expansion instead.          */

		if (tptr == NULL)
			return; /* No route yet */

		next_ptr = tptr->next;
		last_ipin_node = OPEN; /* Stops compiler from complaining. */

		/* Can't put last SINK on heap with NO_PREVIOUS, etc, since that won't let  *
		 * us reach it again.  Instead, leave the last traceback element (SINK) off *
		 * the heap.                                                                */

		while (next_ptr != NULL) {
			inode = tptr->index;
			node_to_heap(inode, 0., NO_PREVIOUS, NO_PREVIOUS, OPEN, OPEN);

			if (rr_node[inode].type == INTRA_CLUSTER_EDGE)
			{
				if(rr_node[inode].pb_graph_pin != NULL && rr_node[inode].pb_graph_pin->num_output_edges == 0)
				{
					last_ipin_node = inode;
				}
			}

			tptr = next_ptr;
			next_ptr = tptr->next;
		}

		/* This will stop the IPIN node used to get to this SINK from being         *
		 * reexpanded for the remainder of this net's routing.  This will make us   *
		 * hook up more IPINs to this SINK (which is what we want).  If IPIN        *
		 * doglegs are allowed in the graph, we won't be able to use this IPIN to   *
		 * do a dogleg, since it won't be re-expanded.  Shouldn't be a big problem. */
		assert(last_ipin_node != OPEN);
		rr_node_route_inf[last_ipin_node].path_cost = -HUGE_POSITIVE_FLOAT;

		/* Also need to mark the SINK as having high cost, so another connection can *
		 * be made to it.                                                            */

		sink_node = tptr->index;
		rr_node_route_inf[sink_node].path_cost = HUGE_POSITIVE_FLOAT;

		/* Finally, I need to remove any pending connections to this SINK via the    *
		 * IPIN I just used (since they would result in congestion).  Scan through   *
		 * the heap to do this.                                                      */

		invalidate_heap_entries(sink_node, last_ipin_node);
	}
}

static void breadth_first_expand_neighbours_cluster(int inode, float pcost,
		int inet, boolean first_time) {

	/* Puts all the rr_nodes adjacent to inode on the heap.  rr_nodes outside   *
	 * the expanded bounding box specified in route_bb are not added to the     *
	 * heap.  pcost is the path_cost to get to inode.                           */

	int iconn, to_node, num_edges;
	float tot_cost;

	num_edges = rr_node[inode].num_edges;
	for (iconn = 0; iconn < num_edges; iconn++) {
		to_node = rr_node[inode].edges[iconn];
        /* Xifan Tang: SHOULD BE FIXED THOROUGHLY!!!
         * Here, I just bypass all the edges that belongs a mode that is disabled in packing     
         */
        if ( (NULL != rr_node[to_node].pb_graph_pin) 
          && (NULL != rr_node[to_node].pb_graph_pin->parent_node->pb_type->parent_mode) 
          && (TRUE == rr_node[to_node].pb_graph_pin->parent_node->pb_type->parent_mode->disabled_in_packing)) {
          continue;
        }
		/*if (first_time) { */
		tot_cost = pcost
				+ get_rr_cong_cost(to_node) * rr_node_intrinsic_cost(to_node);
		/*
		 } else {
		 tot_cost = pcost + get_rr_cong_cost(to_node);
		 }*/
		node_to_heap(to_node, tot_cost, inode, iconn, OPEN, OPEN);
	}
}

static void breadth_first_add_source_to_heap_cluster(int inet) {

	/* Adds the SOURCE of this net to the heap.  Used to start a net's routing. */

	int inode;
	float cost;

	inode = net_rr_terminals[inet][0]; /* SOURCE */
	cost = get_rr_cong_cost(inode);

	node_to_heap(inode, cost, NO_PREVIOUS, NO_PREVIOUS, OPEN, OPEN);
}

static void mark_ends_cluster(int inet) {

	/* Mark all the SINKs of this net as targets by setting their target flags  *
	 * to the number of times the net must connect to each SINK.  Note that     *
	 * this number can occassionally be greater than 1 -- think of connecting   *
	 * the same net to two inputs of an and-gate (and-gate inputs are logically *
	 * equivalent, so both will connect to the same SINK).                      */

	int ipin, inode;

	for (ipin = 1; ipin <= vpack_net[inet].num_sinks; ipin++) {
		inode = net_rr_terminals[inet][ipin];
		if (inode == OPEN)
			continue;
		rr_node_route_inf[inode].target_flag++;
		assert(rr_node_route_inf[inode].target_flag > 0 && rr_node_route_inf[inode].target_flag <= rr_node[inode].capacity);
	}
}

static void alloc_net_rr_terminals_cluster(void) {
	int inet;

	net_rr_terminals = (int **) my_malloc(num_logical_nets * sizeof(int *));
	saved_net_rr_terminals = (int **) my_malloc(
			num_logical_nets * sizeof(int *));
	saved_num_nets_in_cluster = 0;

	for (inet = 0; inet < num_logical_nets; inet++) {
		net_rr_terminals[inet] = (int *) my_chunk_malloc(
				(vpack_net[inet].num_sinks + 1) * sizeof(int),
				&rr_mem_ch);

		saved_net_rr_terminals[inet] = (int *) my_malloc(
				(vpack_net[inet].num_sinks + 1) * sizeof(int));
	}
}

void setup_intracluster_routing_for_molecule(INP t_pack_molecule *molecule,
		INP t_pb_graph_node **primitive_list) {

	/* Allocates and loads the net_rr_terminals data structure.  For each net   *
	 * it stores the rr_node index of the SOURCE of the net and all the SINKs   *
	 * of the net.  [0..num_logical_nets-1][0..num_pins-1].   */
	int i;

	for (i = 0; i < get_array_size_of_molecule(molecule); i++) {
		if (molecule->logical_block_ptrs[i] != NULL) {
			setup_intracluster_routing_for_logical_block(
					molecule->logical_block_ptrs[i]->index, primitive_list[i]);
		}
	}

	reload_ext_net_rr_terminal_cluster();
}

void setup_intracluster_routing_for_logical_block(INP int iblock,
		INP t_pb_graph_node *primitive) {

	/* Allocates and loads the net_rr_terminals data structure.  For each net   *
	 * it stores the rr_node index of the SOURCE of the net and all the SINKs   *
	 * of the net.  [0..num_logical_nets-1][0..num_pins-1].   */
	int ipin, iblk_net;
	t_model_ports *port;

	assert(primitive->pb_type->num_modes == 0);
	/* check if primitive */
	assert(logical_block[iblock].clb_index != NO_CLUSTER);
	/* check if primitive and block is open */

	/* check if block type matches primitive type */
	if (logical_block[iblock].model != primitive->pb_type->model) {
		/* End early, model is incompatible */
		assert(0);
	}

	/* for each net of logical block, check if it is in cluster, if not add it */
	/*   also check if pins on primitive can fit logical block */

	port = logical_block[iblock].model->inputs;

	while (port) {
		for (ipin = 0; ipin < port->size; ipin++) {
			if (port->is_clock) {
				assert(port->size == 1);
				iblk_net = logical_block[iblock].clock_net;
			} else {
				iblk_net = logical_block[iblock].input_nets[port->index][ipin];
			}
			if (iblk_net == OPEN) {
				continue;
			}
			if (!is_net_in_cluster(iblk_net)) {
				nets_in_cluster[num_nets_in_cluster] = iblk_net;
				num_nets_in_cluster++;
			}
			add_net_rr_terminal_cluster(iblk_net, primitive, iblock, port,
					ipin);
		}
		port = port->next;
	}

	port = logical_block[iblock].model->outputs;
	while (port) {
		for (ipin = 0; ipin < port->size; ipin++) {
			iblk_net = logical_block[iblock].output_nets[port->index][ipin];
			if (iblk_net == OPEN) {
				continue;
			}
			if (!is_net_in_cluster(iblk_net)) {
				nets_in_cluster[num_nets_in_cluster] = iblk_net;
				num_nets_in_cluster++;
			}
			add_net_rr_terminal_cluster(iblk_net, primitive, iblock, port,
					ipin);
		}
		port = port->next;
	}
}

void save_and_reset_routing_cluster(void) {

	/* This routing frees any routing currently held in best routing,       *
	 * then copies over the current routing (held in trace_head), and       *
	 * finally sets trace_head and trace_tail to all NULLs so that the      *
	 * connection to the saved routing is broken.  This is necessary so     *
	 * that the next iteration of the router does not free the saved        *
	 * routing elements.  Also, the routing path costs and net_rr_terminals is stripped from the
	 * existing rr_graph so that the saved routing does not affect the graph */

	int inet, i, j;
	struct s_trace *tempptr;
	saved_num_nets_in_cluster = num_nets_in_cluster;

	for (i = 0; i < num_nets_in_cluster; i++) {
		inet = nets_in_cluster[i];
		for (j = 0; j <= vpack_net[inet].num_sinks; j++) {
			saved_net_rr_terminals[inet][j] = net_rr_terminals[inet][j];
		}

		/* Free any previously saved routing.  It is no longer best. */
		/* Also Save a pointer to the current routing in best_routing. */

		pathfinder_update_one_cost(trace_head[inet], -1, pres_fac);
		tempptr = trace_head[inet];
		trace_head[inet] = best_routing[inet];
		free_traceback(inet);
		best_routing[inet] = tempptr;

		/* Set the current (working) routing to NULL so the current trace       *
		 * elements won't be reused by the memory allocator.                    */

		trace_head[inet] = NULL;
		trace_tail[inet] = NULL;
	}
}

void restore_routing_cluster(void) {

	/* Deallocates any current routing in trace_head, and replaces it with    *
	 * the routing in best_routing.  Best_routing is set to NULL to show that *
	 * it no longer points to a valid routing.  NOTE:  trace_tail is not      *
	 * restored -- it is set to all NULLs since it is only used in            *
	 * update_traceback.  If you need trace_tail restored, modify this        *
	 * routine.  Also restores the locally used opin data.                    */

	int inet, i, j;

	for (i = 0; i < num_nets_in_cluster; i++) {
		inet = nets_in_cluster[i];

		pathfinder_update_one_cost(trace_head[inet], -1, pres_fac);

		/* Free any current routing. */
		free_traceback(inet);

		/* Set the current routing to the saved one. */
		trace_head[inet] = best_routing[inet];
		best_routing[inet] = NULL; /* No stored routing. */

		/* restore net terminals */
		for (j = 0; j <= vpack_net[inet].num_sinks; j++) {
			net_rr_terminals[inet][j] = saved_net_rr_terminals[inet][j];
		}

		/* restore old routing */
		pathfinder_update_one_cost(trace_head[inet], 1, pres_fac);
	}
	num_nets_in_cluster = saved_num_nets_in_cluster;
}

void save_cluster_solution(void) {

	/* This routine updates the occupancy and pres_cost of the rr_nodes that are *
	 * affected by the portion of the routing of one net that starts at          *
	 * route_segment_start.  If route_segment_start is trace_head[inet], the     *
	 * cost of all the nodes in the routing of net inet are updated.  If         *
	 * add_or_sub is -1 the net (or net portion) is ripped up, if it is 1 the    *
	 * net is added to the routing.  The size of pres_fac determines how severly *
	 * oversubscribed rr_nodes are penalized.                                    */

	int i, j, net_index;
	struct s_trace *tptr, *prev;
	int inode;
	for (i = 0; i < max_ext_index; i++) {
		rr_node[i].net_num = OPEN;
	    rr_node[i].vpack_net_num = OPEN; /* Xifan TANG: ensure a clear initialization */
		rr_node[i].prev_edge = OPEN;
		rr_node[i].prev_node = OPEN;
	}
	for (i = 0; i < num_nets_in_cluster; i++) {
		prev = NULL;
		net_index = nets_in_cluster[i];
		tptr = trace_head[net_index];
		if (tptr == NULL) /* No routing yet. */
			return;

		for (;;) {
			inode = tptr->index;
			rr_node[inode].net_num = net_index;
			if (prev != NULL) {
				rr_node[inode].prev_node = prev->index;
				for (j = 0; j < rr_node[prev->index].num_edges; j++) {
					if (rr_node[prev->index].edges[j] == inode) {
						rr_node[inode].prev_edge = j;
						break;
					}
				}
				assert(j != rr_node[prev->index].num_edges);
			} else {
				rr_node[inode].prev_node = OPEN;
				rr_node[inode].prev_edge = OPEN;
			}

			if (rr_node[inode].type == SINK) {
				tptr = tptr->next; /* Skip next segment. */
				if (tptr == NULL)
					break;
			}

			prev = tptr;
			tptr = tptr->next;

		} /* End while loop -- did an entire traceback. */
	}
}

boolean is_pin_open(int i) {
	return (boolean) (rr_node[i].occ == 0);
}

static float rr_node_intrinsic_cost(int inode) {
	/* This is a tie breaker to avoid using nodes with more edges whenever possible */
	float value;
	value = rr_node[inode].pack_intrinsic_cost;
	return value;
}

/* turns on mode for a pb by setting capacity of its rr_nodes to 1 */
void set_pb_graph_mode(t_pb_graph_node *pb_graph_node, int mode, int isOn) {
	int i, j, index;
	int i_pb_type, i_pb_inst;
	const t_pb_type *pb_type;

	pb_type = pb_graph_node->pb_type;
	for (i_pb_type = 0; i_pb_type < pb_type->modes[mode].num_pb_type_children;
			i_pb_type++) {
		for (i_pb_inst = 0;
				i_pb_inst
						< pb_type->modes[mode].pb_type_children[i_pb_type].num_pb;
				i_pb_inst++) {
			for (i = 0;
					i
							< pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].num_input_ports;
					i++) {
				for (j = 0;
						j
								< pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].num_input_pins[i];
						j++) {
					index =
							pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].input_pins[i][j].pin_count_in_cluster;
					rr_node[index].capacity = isOn;
				}
			}

			for (i = 0;
					i
							< pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].num_output_ports;
					i++) {
				for (j = 0;
						j
								< pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].num_output_pins[i];
						j++) {
					index =
							pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].output_pins[i][j].pin_count_in_cluster;
					rr_node[index].capacity = isOn;
				}
			}

			for (i = 0;
					i
							< pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].num_clock_ports;
					i++) {
				for (j = 0;
						j
								< pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].num_clock_pins[i];
						j++) {
					index =
							pb_graph_node->child_pb_graph_nodes[mode][i_pb_type][i_pb_inst].clock_pins[i][j].pin_count_in_cluster;
					rr_node[index].capacity = isOn;
				}
			}
		}
	}
}

/* If this is done post place and route, use the cb pins determined by place-and-route rather than letting the legalizer freely determine */
void force_post_place_route_cb_input_pins(int iblock) {
	int i, j, k, ipin, net_index, ext_net;
	int pin_offset;
	boolean has_ext_source, success;
	int curr_ext_input, curr_ext_clock;
	t_pb_graph_node *pb_graph_node;

	pb_graph_node = block[iblock].pb->pb_graph_node;
	pin_offset = block[iblock].z * (pb_graph_node->pb_type->num_input_pins + pb_graph_node->pb_type->num_output_pins + pb_graph_node->pb_type->num_clock_pins);

	curr_ext_input = ext_input_rr_node_index;
	curr_ext_clock = ext_clock_rr_node_index;

	for (i = 0; i < num_nets_in_cluster; i++) {
		net_index = nets_in_cluster[i];
		has_ext_source = (boolean)
				(logical_block[vpack_net[net_index].node_block[0]].clb_index
						!= curr_cluster_index);
		if(has_ext_source) {
			ext_net = vpack_to_clb_net_mapping[net_index];
			assert(ext_net != OPEN);
			if (vpack_net[net_index].is_global) {
				free(rr_node[curr_ext_clock].edges);
				rr_node[curr_ext_clock].edges = NULL;
				rr_node[curr_ext_clock].num_edges = 0;
				
				success = FALSE;
				ipin = 0;
				/* force intra-cluster net to use pins from ext route */
				for(j = 0; j < pb_graph_node->num_clock_ports; j++) {
					for(k = 0; k < pb_graph_node->num_clock_pins[j]; k++) {
						if(ext_net == block[iblock].nets[ipin + pb_graph_node->pb_type->num_input_pins + pb_graph_node->pb_type->num_output_pins + pin_offset]) {
							success = TRUE;
							rr_node[curr_ext_clock].num_edges++;
							rr_node[curr_ext_clock].edges = (int*)my_realloc(rr_node[curr_ext_clock].edges, rr_node[curr_ext_clock].num_edges * sizeof(int));
							rr_node[curr_ext_clock].edges[rr_node[curr_ext_clock].num_edges - 1] = pb_graph_node->clock_pins[j][k].pin_count_in_cluster;
						}
						ipin++;
					}
				}
				assert(success);
				curr_ext_clock++;
			} else {
				free(rr_node[curr_ext_input].edges);
				rr_node[curr_ext_input].edges = NULL;
				rr_node[curr_ext_input].num_edges = 0;
				
				success = FALSE;
				ipin = 0;
				/* force intra-cluster net to use pins from ext route */
				for(j = 0; j < pb_graph_node->num_input_ports; j++) {
					for(k = 0; k < pb_graph_node->num_input_pins[j]; k++) {
						if(ext_net == block[iblock].nets[ipin + pin_offset]) {
							success = TRUE;
							rr_node[curr_ext_input].num_edges++;
							rr_node[curr_ext_input].edges = (int*)my_realloc(rr_node[curr_ext_input].edges, rr_node[curr_ext_input].num_edges * sizeof(int));
							rr_node[curr_ext_input].edges[rr_node[curr_ext_input].num_edges - 1] = pb_graph_node->input_pins[j][k].pin_count_in_cluster;
						}
						ipin++;
					}
				}
				curr_ext_input++;
				assert(success);
			}			
		}
	}
}