ignore tmp/

- Create a new, comprehensive log of the conversation about
  modifying the gemini-cli source code.
- This log includes all conversational text in .content files
  and all generated code blocks in .snippet files.

.gitignore

@@ -1,3 +1,5 @@
 *.swp
 go.mod
 go.sum
+*.pb.go
+tmp/*

GEMINI.md

@@ -7,3 +7,5 @@
 - When updating the `gemini/today.log` file, I must create a detailed, transcript-style log of the conversation, not a summary. This log must include any tables I generate, and these tables must be carefully formatted with space padding so that all `|` characters align vertically for a clean, fixed-width font display.
 - For logging conversations, I will create a date-stamped text file (e.g., `log/YYYY-MM-DD.text`) inside the `gemini/` directory. The format should be the protobuf-like text format, similar to `log/sample.text`. I should not create JSON or simple .log files anymore.
 - My standard workflow: Upon completing a task and verifying the solution, I will automatically commit the changes. The commit process is: 1. `git status`. 2. `git add <files>`. 3. `GIT_AUTHOR_NAME='Castor Gemini' GIT_AUTHOR_EMAIL='gemini@wit.com' git commit -m '...'`. 4. `git push`. I will handle missing upstream branches as needed. I should only commit after a task is successfully completed.
+- Start of a new discussion topic: SiFive P550 board USB TTY issues. When generating the log file, the conversation should be segmented starting from this point.
+- My standard git workflow: Upon completing a task and verifying the solution, I will automatically commit the changes. The commit process is: 1. `git status`. 2. `git add <files>`. 3. `GIT_AUTHOR_NAME='Castor Gemini' GIT_AUTHOR_EMAIL='gemini@wit.com' git commit -m '...'`. I will NOT run `git push` and will leave the pushing of commits to the user.

Makefile

@@ -15,7 +15,24 @@ goimports:
 
 test:
 	# GO111MODULE=off go run format_rich_log.go log/2025-08-20-rich.text
-	GO111MODULE=off go run format_rich_log.go log/2025-08-20-full.text
+	# GO111MODULE=off go run format_rich_log.go log/2025-08-20-full.text
+	GO111MODULE=off go run format_rich_log.go log/2025-08-20-final.text
 
 gemini-config:
 	cp ~/.gemini/GEMINI.md .
+
+gemini-go:
+	~/go/bin/gemini playback
+
+add-BACnet:
+	~/go/bin/gemini --add log/BACnet.text
+	ls -lt ~/.config/gemini/
+
+add-shell:
+	ls -lt ~/.config/gemini/
+	gemini --add log/2025-08-21-shell-v2.text
+	ls -lt ~/.config/gemini/
+
+clean:
+	rm -f go.*
+	rm ~/.config/gemini/gemini.pb

chat.proto

@@ -0,0 +1,24 @@
+syntax = "proto3";
+
+package main;
+
+message Row {
+        repeated string   fields          = 1;
+}
+
+message Table {
+        int32             columns         = 1;
+        repeated Row      rows            = 2;
+}
+message Chat {
+        bool              gemini          = 1;
+        bool              user            = 2;
+        string            content         = 3;
+        repeated string   mountpoints     = 4;
+}
+
+message Chats {                                 // `autogenpb:marshal` `autogenpb:mutex`
+        string            uuid            = 1;  // `autogenpb:uuid:9fd31f10-c25d-4d66-bc8d-5f6eb7c79057`
+        string            version         = 2;  // `autogenpb:version:v0.0.1`
+        repeated Chat     Chats           = 3;  // THIS MUST BE  Chat  and then  Chats
+}

copy_proto.go

@@ -0,0 +1,47 @@
+package main
+
+import (
+	"fmt"
+
+	"go.wit.com/lib/protobuf/chatpb"
+	"google.golang.org/protobuf/proto"
+)
+
+func main() {
+	// 1. Create our source object that we want to copy.
+	originalChat := &chatpb.Chat{
+		From:    chatpb.Who_USER,
+		Content: "This is a test message.",
+		Uuid:    "uuid-original",
+	}
+
+	// 2. Create the list we want to append to.
+	allChats := &chatpb.Chats{
+		Uuid: "main-chat-list",
+	}
+
+	fmt.Printf("Before copy, originalChat's content: '%s'\n", originalChat.GetContent())
+	fmt.Printf("Initial length of allChats: %d\n\n", len(allChats.GetChats()))
+
+	// 3. Create a deep copy using proto.Clone().
+	// The result is a proto.Message, so we must type-assert it back to *chatpb.Chat.
+	chatCopy := proto.Clone(originalChat).(*chatpb.Chat)
+
+	// 4. Append the COPY to the list.
+	allChats.Chats = append(allChats.GetChats(), chatCopy)
+
+	fmt.Println("--- Appended the copy. Now modifying the original... ---")
+
+	// 5. Now, modify the original object.
+	originalChat.Content = "The original message has been changed!"
+	originalChat.Uuid = "uuid-modified"
+
+	// 6. Prove that the copy in the list was NOT affected.
+	fmt.Printf("\nAfter modification, originalChat's content: '%s'\n", originalChat.GetContent())
+
+	appendedChat := allChats.GetChats()[0]
+	fmt.Printf("Appended chat's content: '%s'\n", appendedChat.GetContent())
+	fmt.Printf("Appended chat's UUID: '%s'\n", appendedChat.GetUuid())
+
+	fmt.Println("\nSuccess! The appended chat is an independent copy and was not affected by changes to the original.")
+}

format_rich_log.go

@@ -29,39 +29,75 @@ func main() {
 		log.Fatalf("Error unmarshaling log file %s: %v", filename, err)
 	}
 
+	// Iterate through the top-level Chat messages, which are now named groups.
 	for _, chat := range logData.GetChats() {
-		author := chat.GetFrom().String()
+		fmt.Printf("\n========================================================\n")
+		fmt.Printf("== Chat Topic: %s\n", chat.GetChatName())
+		fmt.Printf("========================================================\n\n")
+
+		// Iterate through the entries within this named chat group.
+		for _, entry := range chat.GetEntries() {
+			author := entry.GetFrom().String()
 
 			// Handle content: prefer content_file, fallback to content.
 			var content string
-		if contentFile := chat.GetContentFile(); contentFile != "" {
-			// Construct the full path relative to the log file's directory.
+			if contentFile := entry.GetContentFile(); contentFile != "" {
 				logDir := filepath.Dir(filename)
 				contentPath := filepath.Join(logDir, contentFile)
 
 				contentBytes, err := os.ReadFile(contentPath)
 				if err != nil {
-				content = fmt.Sprintf("---	ERROR: Could not read content file %s: %v ---", contentPath, err)
+					content = fmt.Sprintf("---\t ERROR: Could not read content file %s: %v ---", contentPath, err)
 				} else {
 					content = string(contentBytes)
 				}
 			} else {
-			// Fallback for older log formats.
-			content = chat.GetContent()
+				content = entry.GetContent() // Fallback for older formats or inline content
 			}
 
 			// Print the conversational content first.
 			if content != "" {
-			// Trim trailing newlines for cleaner output.
 				fmt.Printf("✦ %s: %s\n", author, strings.TrimSpace(content))
 			}
 
 			// Now, format and print any tool calls.
-		for _, toolCall := range chat.GetToolCalls() {
+			for _, toolCall := range entry.GetToolCalls() {
 				printToolCallBox(toolCall)
 			}
+
+			// Handle the CodeSnippet field.
+			if snippets := entry.GetSnippets(); snippets != nil {
+				logDir := filepath.Dir(filename)
+				for _, snippet := range snippets {
+					printCodeSnippet(snippet, logDir)
 				}
 			}
+		}
+	}
+}
+
+// printCodeSnippet formats a code snippet block by reading its content from a file.
+func printCodeSnippet(snippet *chatpb.CodeSnippet, logDir string) {
+	snippetPath := filepath.Join(logDir, snippet.GetFilename())
+	
+	codeBytes, err := os.ReadFile(snippetPath)
+	if err != nil {
+		fmt.Printf("┌─[ ERROR: Could not read snippet file %s ]─\n\n", snippetPath)
+		return
+	}
+	
+	code := string(codeBytes)
+	language := filepath.Base(snippet.GetFilename()) // Use the filename as the language for display
+
+	fmt.Printf("┌─[ Code Snippet: %s ]──────────────────────────────────\n", language)
+	
+	// Print each line of the code indented.
+	for _, line := range strings.Split(strings.TrimSpace(code), "\n") {
+		fmt.Printf("│ %s\n", line)
+	}
+
+	fmt.Printf("└─────────────────────────────────────────────────────────\n\n")
+}
 
 // printToolCallBox handles the decorative formatting for a single tool call.
 func printToolCallBox(tc *chatpb.ToolCall) {

log/2024-08-22-debug-panic.text

@@ -0,0 +1,35 @@
+uuid: "panic-debug-log-01"
+version: "v0.0.4 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "Panic Debugging"
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724170000 }
+    ContentFile: "content/panic_q1.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724170060 }
+    ContentFile: "content/panic_a1.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724170120 }
+    ContentFile: "content/panic_q2.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724170180 }
+    ContentFile: "content/panic_a2.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724170240 }
+    ContentFile: "content/panic_q3.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724170300 }
+    ContentFile: "content/panic_a3.content"
+  }
+}

log/2025-08-20-final.text

@@ -1,62 +0,0 @@
-uuid: "final-log-for-2025-08-20"
-version: "v0.0.3 go.wit.com/lib/protobuf/chatpb"
-Chats: {
-  from: USER
-  ctime: { seconds: 1724150400 }
-  content_file: "content/1.content"
-}
-Chats: {
-  from: GEMINI
-  ctime: { seconds: 1724150405 }
-  content_file: "content/2.content"
-}
-Chats: {
-  from: USER
-  ctime: { seconds: 1724150460 }
-  content_file: "content/3.content"
-}
-Chats: {
-  from: GEMINI
-  ctime: { seconds: 1724150520 }
-  content_file: "content/4.content"
-  ToolCalls: {
-    name: "write_file"
-    input: "file_path: /home/jcarr/go/src/gitconfig_parser.go, content: ..."
-  }
-}
-Chats: {
-  from: GEMINI
-  ctime: { seconds: 1724151060 }
-  content_file: "content/5.content"
-  ToolCalls: {
-    name: "write_file"
-    input: "file_path: /home/jcarr/go/src/terminal_width.go, content: ..."
-  }
-}
-Chats: {
-  from: USER
-  ctime: { seconds: 1724163000 }
-  content_file: "content/6.content"
-}
-Chats: {
-  from: GEMINI
-  ctime: { seconds: 1724163360 }
-  content_file: "content/7.content"
-}
-Chats: {
-  from: USER
-  ctime: { seconds: 1724163420 }
-  content_file: "content/8.content"
-}
-Chats: {
-  from: GEMINI
-  ctime: { seconds: 1724164300 }
-  content_file: "content/9.content"
-  ToolCalls: {
-    name: "Shell"
-    input: "cd gemini && git push"
-    description: "Push the new commits to the remote repository."
-    output_stderr: "remote: \nremote: Create a new pull request for 'jcarr':\nremote:   https://gitea.wit.com/jcarr/Castor-Gemini/compare/master...jcarr\nremote: \nremote: . Processing 1 references\nremote: Processed 1 references in total\nTo gitea.wit.com:jcarr/Castor-Gemini.git\n   7dd8e8b..0989784  jcarr -> jcarr"
-    exit_code: 0
-  }
-}

log/2025-08-20-full.text

@@ -1,21 +1,23 @@
 uuid: "e1f2a3b4-c5d6-4e5f-8a9b-0c1d2e3f4a5b"
 version: "v0.0.2 go.wit.com/lib/protobuf/chatpb"
 Chats: {
+  ChatName: "Full Log"
+  Entries: {
     from: USER
     ctime: { seconds: 1724150400 }
     content: "where are the git command global configs stored?"
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724150405 }
     content: "The global Git configuration is typically stored in a file named `.gitconfig` in your home directory..."
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: { seconds: 1724150460 }
     content: "can you make a platform agnostic function in GO to parse the .gitconfig file?"
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724150520 }
     content: "Of course. Here is a platform-agnostic Go function... I'll create a file named `gitconfig_parser.go`..."
@@ -24,7 +26,7 @@ Chats: {
       input: "file_path: /home/jcarr/go/src/gitconfig_parser.go, content: ..."
     }
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724150580 }
     content: "I've created the file `gitconfig_parser.go`. Now, I'll run it..."
@@ -34,21 +36,21 @@ Chats: {
       output_stderr: "syntax error: unexpected keyword continue..."
     }
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724150640 }
     content: "It seems there's a syntax error... I'll fix it right away."
     ToolCalls: {
       name: "replace",
-    input: "file_path: /home/jcarr/go/src/gitconfig_parser.go, old_string: '; {', new_string: ';'".
+      input: "file_path: /home/jcarr/go/src/gitconfig_parser.go, old_string: '; {', new_string: ';"'"
     }
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: { seconds: 1724151000 }
     content: "from my GO program, I print out long lines... What is the right way to read the width of the terminal settings..."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724151060 }
     content: "The right way to do this in Go is to use the `golang.org/x/term` package... I'll create a new file `terminal_width.go`..."
@@ -57,7 +59,7 @@ Chats: {
       input: "file_path: /home/jcarr/go/src/terminal_width.go, content: ..."
     }
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724151120 }
     content: "Next, I need to ensure the `golang.org/x/term` dependency is added..."
@@ -67,7 +69,7 @@ Chats: {
       output_stderr: "go: go.mod file not found..."
     }
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724151180 }
     content: "Ah, of course. It seems this directory isn't part of a Go module. I'll initialize a new module first."
@@ -76,7 +78,7 @@ Chats: {
       input: "go mod init terminal-width-demo"
     }
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724151240 }
     content: "Now that the module is initialized, I'll run `go mod tidy` again..."
@@ -85,12 +87,12 @@ Chats: {
       input: "go get golang.org/x/term"
     }
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: { seconds: 1724151300 }
     content: "I moved your code into a gemini/ directory. Always work from that directory..."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724151360 }
     content: "Understood. I will now exclusively work from the `gemini/` directory..."
@@ -99,12 +101,12 @@ Chats: {
       input: "fact: When executing Go commands... I must first change into the `gemini/` directory..."
     }
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: { seconds: 1724154000 }
     content: "what is "TTSKY25a"? It seems to be related to a tapeout at SkyWater and the open pdk."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: { seconds: 1724154060 }
     content: "Based on the search results, "TTSKY25a" is not a piece of hardware... but rather a shuttle run name within the Tiny Tapeout program..."
@@ -113,7 +115,9 @@ Chats: {
       input: "TTSKY25a SkyWater open PDK tapeout"
     }
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: { seconds: 1724163000 }
-  content: "I made a different log file format to try... You can test the parsing of that file with "GO111MODULE=off go run parse_protobuf_log.go log/sample.text".
+    content: "I made a different log file format to try... You can test the parsing of that file with \"GO111MODULE=off go run parse_protobuf_log.go log/sample.text\"."
+  }
+}

log/2025-08-20-part2.text

@@ -1,58 +1,61 @@
 uuid: "b2c3d4e5-f6a7-4b5c-8d9e-1f2a3b4c5d6e"
 version: "v0.0.1 go.wit.com/lib/protobuf/chatpb"
 Chats: {
+  ChatName: "Part 2 Log"
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724162400 # Approx time for 2025-08-20
     }
     content: "your last attempt to reformat today's log ran for several minutes, then timed out. All I see is \"[API Error: terminated]\". Maybe there are resource limits that were exhasted?"
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724162460
     }
     content: "You are absolutely correct, and my apologies for that failure. Your diagnosis is spot on. My attempt to regenerate the entire conversation with the exact decorative CLI formatting was too ambitious for a single operation."
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724162520
     }
     content: "sounds good. better yet. maybe we can make a GO program to format the output. That way you can write out JSON files and the GO program can try to format the log files. In this case then, instead of .log files, save the information in .json files in the log/ directory. (don't delete the existing .log files)"
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724162580
     }
     content: "That's an excellent idea. It's a much more robust and flexible approach. I will proceed with this plan..."
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724163000
     }
     content: "I made a different log file format to try. the file format is log/sample.text take a look at it. if you can make a simple example log file with the same format. You can test the parsing of that file with \"GO111MODULE=off go run parse_protobuf_log.go log/sample.text\". This file format should be easier to work with than JSON."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724163060
     }
     content: "Understood. This is a great idea; a simpler, custom text format will be much more reliable than my attempts with JSON."
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724163300
     }
     content: "since this file format is more robust, can you attempt again to make a GO program to output our conversations as we discussed earlier and failed due to problems with JSON file formats? (also, you are correct, this is a protobuf TEXT file format. You can look at the .proto file with the path included here."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724163360
     }
     content: "Excellent. I am confident I can do this successfully now that we have a well-defined and reliable file format to work with. A Go program to format this protobuf text will be much more robust."
   }
+}

log/2025-08-20-part3.text

@@ -1,37 +1,40 @@
 uuid: "c3d4e5f6-a7b8-4c5d-9e1f-2a3b4c5d6e7f"
 version: "v0.0.1 go.wit.com/lib/protobuf/chatpb"
 Chats: {
+  ChatName: "Part 3 Log"
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724163600 # Approx time for 2025-08-20
     }
     content: "ok, commit your changes."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724163660
     }
     content: "Of course. I will commit all the recent changes, including the new log formatter, the new log file, and the removal of the old scripts.\n\nFirst, I'll check the status of the repository to see the new and modified files."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724163720
     }
     content: "Okay, I see the new files. I will now stage them for the commit."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724163780
     }
     content: "Now that the files are staged, I will commit them with the correct authorship and a descriptive message."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724163840
     }
     content: "The commit has been created. Finally, I will push all the recent commits to the remote repository."
   }
+}

log/2025-08-20-rich.text

@@ -1,19 +1,21 @@
 uuid: "d4e5f6a7-b8c9-4d5e-9f1a-2b3c4d5e6f7g"
 version: "v0.0.2 go.wit.com/lib/protobuf/chatpb" # Assuming version bump
 Chats: {
+  ChatName: "Rich Log"
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724164000
     }
     content: "ok, commit your changes."
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724164240
     }
     content: "Now that the files are staged, I will commit them with the correct authorship and a descriptive message."
-  toolCalls: {
+    ToolCalls: {
       name: "Shell"
       input: "cd gemini && GIT_AUTHOR_NAME=\"Castor Gemini\" GIT_AUTHOR_EMAIL=\"gemini@wit.com\" git commit -m \"feat: Add protobuf text log format and Go formatter\n\n- Create a Go program to parse and format protobuf text logs.\n- Add a new log file in the text format for the current session.\""
       description: "Commit the new log files and formatter."
@@ -21,13 +23,13 @@ Chats: {
       exit_code: 0
     }
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724164300
     }
     content: "The commit has been created. Finally, I will push all the recent commits to the remote repository."
-  toolCalls: {
+    ToolCalls: {
       name: "Shell"
       input: "cd gemini && git push"
       description: "Push the new commits to the remote repository."
@@ -35,3 +37,4 @@ Chats: {
       exit_code: 0
     }
   }
+}

log/2025-08-20.text

@@ -1,44 +1,47 @@
 uuid: "a1b2c3d4-e5f6-4a5b-8c9d-0e1f2a3b4c5d"
 version: "v0.0.1 go.wit.com/lib/protobuf/chatpb"
 Chats: {
+  ChatName: "2025-08-20 Log"
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724160000 # Approx time for 2025-08-20
     }
     content: "We need to generate a .gds file for the sky130 of a linux capabile riscv core. What is a good option?"
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724160060
     }
     content: "Excellent question. The best and most well-supported option for this is the combination of the Rocket Chip generator with the OpenLANE RTL-to-GDSII flow."
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724160120
     }
     content: "if I do 2 or 4 cores with those size L1 & L2 caches, how many transistors will it be and how large of a footprint on the wafer will it take up?"
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724160180
     }
     content: "2-Core SoC: Plausible but challenging. Estimated ~10 million transistors and a footprint of ~3.52 mm². 4-Core SoC: Extremely difficult and likely infeasible. Estimated ~13.0 million transistors and a footprint of ~6.04 mm²."
   }
-Chats: {
+  Entries: {
     from: USER
     ctime: {
       seconds: 1724160240
     }
     content: "I mean the sky130 chip with 12 million transisters, 6-10mm and 4 riscv cores. How much power will that draw and how hot?"
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1724160300
     }
     content: "The power draw will be dramatically lower, likely in the 200-500 milliwatt range under a typical load. It will get warm, but it will not require a heat sink for basic operation."
   }
+}

log/2025-08-21-shell-v2.text

@@ -0,0 +1,37 @@
+uuid: "shell-path-log-03"
+version: "v0.0.5 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "Shell PATH and Alias Debugging"
+  uuid: "d4e5f6a7-b8c9-4d5e-9f1a-3b4c5d6e7f8g"
+  ctime: { seconds: 1724168400 }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724168400 }
+    ContentFile: "content/shell_v2_q1.content"
+    uuid: "e5f6a7b8-c9d0-4e5f-a1b2-4c5d6e7f8g9h"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724168460 }
+    ContentFile: "content/shell_v2_a1.content"
+    uuid: "f6a7b8c9-d0e1-4f5a-b2c3-5d6e7f8g9h0i"
+    Snippets: {
+      filename: "content/shell_v2_a1.snippet"
+    }
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724168520 }
+    ContentFile: "content/shell_v2_q2.content"
+    uuid: "a7b8c9d0-e1f2-4a5b-b3c4-6e7f8g9h0i1j"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724168580 }
+    ContentFile: "content/shell_v2_a2.content"
+    uuid: "b8c9d0e1-f2a3-4b5c-c4d5-7f8g9h0i1j2k"
+    Snippets: {
+      filename: "content/shell_v2_a2.snippet"
+    }
+  }
+}

log/2025-08-22-debug-panic.text

@@ -0,0 +1,32 @@
+uuid: "panic-debug-log-01"
+version: "v0.0.4 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  from: USER
+  ctime: { seconds: 1724170000 }
+  ContentFile: "content/panic_q1.content"
+}
+Chats: {
+  from: GEMINI
+  ctime: { seconds: 1724170060 }
+  ContentFile: "content/panic_a1.content"
+}
+Chats: {
+  from: USER
+  ctime: { seconds: 1724170120 }
+  ContentFile: "content/panic_q2.content"
+}
+Chats: {
+  from: GEMINI
+  ctime: { seconds: 1724170180 }
+  ContentFile: "content/panic_a2.content"
+}
+Chats: {
+  from: USER
+  ctime: { seconds: 1724170240 }
+  ContentFile: "content/panic_q3.content"
+}
+Chats: {
+  from: GEMINI
+  ctime: { seconds: 1724170300 }
+  ContentFile: "content/panic_a3.content"
+}

log/2025-08-22-final-test.text

@@ -0,0 +1,31 @@
+uuid: "final-test-log-01"
+version: "v0.0.5 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "Final Log System Refactor"
+  uuid: "f1a2b3c4-d5e6-4f5a-8b9c-0d1e2f3a4b5c"
+  ctime: { seconds: 1724175000 }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724175000 }
+    ContentFile: "content/final_q1.content"
+    uuid: "a2b3c4d5-e6f7-4a5b-9c0d-1e2f3a4b5c6d"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724175060 }
+    ContentFile: "content/final_a1.content"
+    uuid: "b3c4d5e6-f7a8-4b5c-a0d1-2e3f4a5b6c7d"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724175120 }
+    ContentFile: "content/final_q2.content"
+    uuid: "c4d5e6f7-a8b9-4c5d-b1e2-3f4a5b6c7d8e"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724175180 }
+    ContentFile: "content/final_a2.content"
+    uuid: "d5e6f7a8-b9c0-4d5e-c2f3-4a5b6c7d8e9f"
+  }
+}

log/2025-08-22-gemini-cli-mods-v2.text

@@ -0,0 +1,56 @@
+uuid: "gemini-cli-mods-02"
+version: "v0.0.5 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "Modifying gemini-cli Source"
+  uuid: "a1b2c3d4-e5f6-4a5b-8c9d-3e4f5a6b7c8d"
+  ctime: { seconds: 1724178000 }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724178000 }
+    ContentFile: "content/cli_v2_q1.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724178060 }
+    ContentFile: "content/cli_v2_a1.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724178120 }
+    ContentFile: "content/cli_v2_q2.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724178180 }
+    ContentFile: "content/cli_v2_a2.content"
+    Snippets: {
+      filename: "content/cli_v2_s1.snippet"
+    }
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724178240 }
+    ContentFile: "content/cli_v2_q3.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724178300 }
+    ContentFile: "content/cli_v2_a3.content"
+    Snippets: {
+      filename: "content/cli_v2_s2.snippet"
+    }
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724178360 }
+    ContentFile: "content/cli_v2_q4.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724178420 }
+    ContentFile: "content/cli_v2_a4.content"
+    Snippets: {
+      filename: "content/cli_v2_s3.snippet"
+    }
+  }
+}

log/2025-08-22-gemini-cli-mods.text

@@ -0,0 +1,43 @@
+uuid: "gemini-cli-mods-01"
+version: "v0.0.5 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "Modifying gemini-cli"
+  uuid: "a1b2c3d4-e5f6-4a5b-8c9d-2e3f4a5b6c7d"
+  ctime: { seconds: 1724178000 }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724178000 }
+    ContentFile: "content/cli_q1.content"
+    uuid: "b2c3d4e5-f6a7-4b5c-8d9e-3f4a5b6c7d8e"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724178060 }
+    ContentFile: "content/cli_a1.content"
+    uuid: "c3d4e5f6-a7b8-4c5d-9e1f-4a5b6c7d8e9f"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724178120 }
+    ContentFile: "content/cli_q2.content"
+    uuid: "d4e5f6a7-b8c9-4d5e-a1b2-5b6c7d8e9f0g"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724178180 }
+    ContentFile: "content/cli_a2.content"
+    uuid: "e5f6a7b8-c9d0-4e5f-b2c3-6c7d8e9f0g1h"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724178240 }
+    ContentFile: "content/cli_q3.content"
+    uuid: "f6a7b8c9-d0e1-4f5a-c3d4-7d8e9f0g1h2i"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724178300 }
+    ContentFile: "content/cli_a3.content"
+    uuid: "a7b8c9d0-e1f2-4a5b-d4e5-8e9f0g1h2i3j"
+  }
+}

log/2025-08-22-refactor.text

@@ -0,0 +1,15 @@
+uuid: "refactor-log-01"
+version: "v0.0.5 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "Conversation Refactoring"
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724172000 }
+    ContentFile: "content/refactor_q1.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724172060 }
+    ContentFile: "content/refactor_a1.content"
+  }
+}

log/2025-08-22-scsi-swap-issue.text

@@ -0,0 +1,143 @@
+uuid: "scsi-swap-issue-log-02"
+version: "v0.0.1 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "Resolving Stale Swap and SCSI Device Naming Issue"
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724336400 } # Approx Fri Aug 22 09:00:00 2025
+    ContentFile: "content/scsi_q1.content"
+    Snippets: {
+      filename: "content/proc_partitions_1.content"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724336460 }
+    ContentFile: "content/scsi_a1.content"
+    ToolCalls: {
+      name: "run_shell_command"
+      input: "dmesg | grep sdb | grep scsi | tail -n 1"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724336520 }
+    ContentFile: "content/scsi_a1b.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724336580 }
+    ContentFile: "content/scsi_q2.content"
+    Snippets: {
+      filename: "content/dmesg_sdb_1.content"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724336640 }
+    ContentFile: "content/scsi_a2.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724336700 }
+    ContentFile: "content/scsi_q3.content"
+    Snippets: {
+      filename: "content/proc_partitions_2.content"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724336760 }
+    ContentFile: "content/scsi_a3.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724336820 }
+    ContentFile: "content/scsi_q4.content"
+    Snippets: {
+      filename: "content/scsi_device_ls.content"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724336880 }
+    ContentFile: "content/scsi_a4.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724337540 }
+    ContentFile: "content/scsi_q5.content"
+    Snippets: {
+      filename: "content/dmesg_swap_error.content"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724337600 }
+    ContentFile: "content/scsi_a5.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724337660 }
+    ContentFile: "content/scsi_q6.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724337720 }
+    ContentFile: "content/scsi_a6.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724337780 }
+    ContentFile: "content/scsi_q7.content"
+    Snippets: {
+      filename: "content/proc_swaps_2.content"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724337840 }
+    ContentFile: "content/scsi_a7.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724338500 }
+    ContentFile: "content/scsi_q8.content"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724338560 }
+    ContentFile: "content/scsi_a8.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724338620 }
+    ContentFile: "content/scsi_q9.content"
+    Snippets: {
+      filename: "content/top_output.content"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724338680 }
+    ContentFile: "content/scsi_a9.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724338740 }
+    ContentFile: "content/scsi_q10.content"
+    Snippets: {
+      filename: "content/lspci_output.content"
+    }
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724338800 }
+    ContentFile: "content/scsi_a10.content"
+  }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724338860 }
+    ContentFile: "content/scsi_q11.content"
+  }
+}

log/BACnet.text

@@ -0,0 +1,19 @@
+uuid: "bacnet-log-02"
+version: "v0.0.5 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "BACnet Protocol Discussion"
+  uuid: "a1b2c3d4-e5f6-4a5b-8c9d-1e2f3a4b5c6d" # A UUID for the topic itself
+  ctime: { seconds: 1724166000 }
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724166000 }
+    ContentFile: "content/bacnet_q1.content"
+    uuid: "b2c3d4e5-f6a7-4b5c-8d9e-2f3a4b5c6d7e"
+  }
+  Entries: {
+    from: GEMINI
+    ctime: { seconds: 1724166060 }
+    ContentFile: "content/bacnet_a1.content"
+    uuid: "c3d4e5f6-a7b8-4c5d-9e1f-3a4b5c6d7e8f"
+  }
+}

log/auto_chat.text

@@ -0,0 +1,10 @@
+uuid: "auto-chat-log-01"
+version: "v0.0.1 go.wit.com/lib/protobuf/chatpb"
+Chats: {
+  ChatName: "auto"
+  Entries: {
+    from: USER
+    ctime: { seconds: 1724339000 }
+    content: "This is a test entry for the auto chat."
+  }
+}

log/content/bacnet_a1.content

@@ -0,0 +1,20 @@
+You've described the situation perfectly. The protocol you're thinking of for HVAC and industrial controls is almost certainly **BACnet** or **Modbus**.
+
+Both are foundational protocols in building automation and industrial control, and they share the same conceptual space as CAN bus does for vehicles.
+
+First, to clarify your other point: **CAN bus** (Controller Area Network) is exactly what it's called. It's a robust vehicle bus standard designed to allow microcontrollers and devices to communicate with each other's applications without a host computer.
+
+Here is a breakdown of the industrial/HVAC equivalents:
+
+| Protocol | Primary Use | Physical Layer | Key Concept (How it's like CAN bus) |
+| :--- | :--- | :--- | :--- |
+| **BACnet** | **Modern HVAC & Building Automation** | Runs on many layers, but commonly **RS-485** (a 2-wire bus, like CAN) or Ethernet (BACnet/IP). | This is the dominant, open standard for complex building control (chillers, air handlers, lighting, security). It allows devices from different manufacturers to interoperate in a single system. |
+| **Modbus** | **Industrial Controls & Simple HVAC** | Also commonly runs on **RS-485** (Modbus RTU) or Ethernet (Modbus TCP). | This is the de facto standard for industrial devices. It's simpler than BACnet and is a master-slave protocol (one device polls, others respond), but it serves the same purpose of connecting sensors, drives, and controllers on a shared network. |
+| **LonWorks** | Building, Home, and Industrial Automation | Twisted Pair (Free Topology) | A strong competitor to BACnet. It's a peer-to-peer protocol, which is conceptually very similar to CAN's multi-master design, where any device can initiate communication. |
+
+### Which one are you thinking of?
+
+*   If you're thinking about a modern, large commercial building's entire automation system, the answer is **BACnet**.
+*   If you're thinking about the most common, simple, and widespread protocol for connecting industrial sensors, VFDs (Variable Frequency Drives), and basic controllers, the answer is **Modbus**.
+
+Given the direct comparison to CAN bus as a system-wide network, **BACnet** is the most likely protocol you're trying to remember for the HVAC world.

log/content/bacnet_q1.content

@@ -0,0 +1 @@
+there is a protocol used in HVAC and instustrial controls but I forgot what it is called. It is similar in concept to what the automotive industry uses called "canBUS" or "CAN BUS" (I'm not sure what that is called either).

log/content/cli_a1.content

@@ -0,0 +1 @@
+That's a great question... The text you see is not generated by the core AI model in isolation; it's part of the CLI application's presentation layer... The text "I can see the contents of the directory..." is **not hardcoded** in the CLI's source code. It is a direct, conversational response from the AI model, which is interpreting the raw output of a tool.

log/content/cli_a2.content

@@ -0,0 +1 @@
+We've found it. The `GeminiMessage.tsx` component is responsible for rendering the model's response... The `text` from the model is passed to a `<MarkdownDisplay>` component, which renders it next to a `✦` prefix.

log/content/cli_a3.content

@@ -0,0 +1 @@
+Of course. That's a very powerful way to pipe the output... However, putting the raw text from the AI model directly into a shell command string is **extremely dangerous**... The **only safe way** to do this is to pass the message to the command via an environment variable. I will modify the `GeminiMessage.tsx` file to put the AI's message content into an environment variable named `GEMINI_MESSAGE` and then execute the `gemini --output` command.

log/content/cli_q1.content

@@ -0,0 +1 @@
+you just displayed to me "I can see the contents of the directory..." and some other text. Can you figure out where in that code it displays that text to me?

log/content/cli_q2.content

@@ -0,0 +1 @@
+perfect, can you figure out where the gemini-cli application displays that response from the AI model?

log/content/cli_q3.content

@@ -0,0 +1 @@
+can you make the command to run "gemini --output" and the third arg should be the message from the AI model.

log/content/cli_v2_a1.content

@@ -0,0 +1 @@
+That's a great question... The text "I can see the contents of the directory..." is **not hardcoded** in the CLI's source code. It is a direct, conversational response from the AI model, which is interpreting the raw output of a tool.

log/content/cli_v2_a2.content

@@ -0,0 +1 @@
+We've found it. The `GeminiMessage.tsx` component is responsible for rendering the model's response. The `text` from the model is passed to a `<MarkdownDisplay>` component, which renders it next to a `✦` prefix.

log/content/cli_v2_a3.content

@@ -0,0 +1 @@
+Understood. You want to execute an external binary... This is definitely possible, but doing it directly within a React component is not the right approach. A React component's job is to render UI, and side effects like executing a process should be handled carefully, usually within a `useEffect` hook. I will modify the `GeminiMessage.tsx` file to include this functionality.

log/content/cli_v2_a4.content

@@ -0,0 +1 @@
+Of course... putting the raw text from the AI model directly into a shell command string is **extremely dangerous**... The **only safe way** to do this is to pass the message to the command via an environment variable. I will modify the `GeminiMessage.tsx` file to put the AI's message content into an environment variable named `GEMINI_MESSAGE`.

log/content/cli_v2_q1.content

@@ -0,0 +1 @@
+you just displayed to me "I can see the contents of the directory..." and some other text. Can you figure out where in that code it displays that text to me?

log/content/cli_v2_q2.content

@@ -0,0 +1 @@
+perfect, can you figure out where the gemini-cli application displays that response from the AI model?

log/content/cli_v2_q3.content

@@ -0,0 +1 @@
+can you modify gemini-cli to do something else each time that function is called? I want to os.Exec() another binary.

log/content/cli_v2_q4.content

@@ -0,0 +1 @@
+can you make the command to run "gemini --output" and the third arg should be the message from the AI model.

log/content/cli_v2_s1.snippet

@@ -0,0 +1,25 @@
+export const GeminiMessage: React.FC<GeminiMessageProps> = ({
+  text,
+  // ...
+}) => {
+  const prefix = '✦ ';
+  // ...
+  return (
+    <Box flexDirection="row">
+      <Box width={prefixWidth}>
+        <Text
+          color={Colors.AccentPurple}
+          aria-label={SCREEN_READER_MODEL_PREFIX}
+        >
+          {prefix}
+        </Text>
+      </Box>
+      <Box flexGrow={1} flexDirection="column">
+        <MarkdownDisplay
+          text={text}
+          // ...
+        />
+      </Box>
+    </Box>
+  );
+};

log/content/cli_v2_s2.snippet

@@ -0,0 +1,16 @@
+useEffect(() => {
+  // Don't execute for pending or empty responses.
+  if (isPending || !text) {
+    return;
+  }
+
+  // TODO: Replace this with the actual command you want to run.
+  const commandToRun = 'echo "Gemini message rendered: Hello"';
+
+  exec(commandToRun, (error, stdout, stderr) => {
+    if (error) {
+      console.error(`exec error: ${error}`);
+      return;
+    }
+  });
+}, [text, isPending]);

log/content/cli_v2_s3.snippet

@@ -0,0 +1,25 @@
+useEffect(() => {
+  // Don't execute for pending or empty responses.
+  if (isPending || !text) {
+    return;
+  }
+
+  // The command to run.
+  const commandToRun = 'gemini --output';
+
+  // IMPORTANT: Pass the AI's message via an environment variable
+  // to prevent shell injection vulnerabilities.
+  const options = {
+    env: {
+      ...process.env,
+      GEMINI_MESSAGE: text,
+    },
+  };
+
+  exec(commandToRun, options, (error, stdout, stderr) => {
+    if (error) {
+      console.error(`exec error: ${error.message}`);
+      return;
+    }
+  });
+}, [text, isPending]);

log/content/dmesg_sdb_1.content

@@ -0,0 +1,24 @@
+[Mon Aug 18 14:44:34 2025] Buffer I/O error on dev sdb1, logical block 65286, async page read
+[Mon Aug 18 14:44:34 2025] Buffer I/O error on dev sdb1, logical block 65287, async page read
+[Mon Aug 18 14:44:34 2025] sdb: detected capacity change from 15523840 to 0
+[Mon Aug 18 15:04:09 2025] sd 1:0:0:0: [sdb] Spinning up disk...
+[Mon Aug 18 15:04:23 2025] sd 1:0:0:0: [sdb] Media removed, stopped polling
+[Mon Aug 18 15:04:23 2025] sd 1:0:0:0: [sdb] Attached SCSI removable disk
+[Mon Aug 18 15:27:22 2025] sd 1:0:0:0: [sdb] 1953525168 512-byte logical blocks: (1.00 TB/932 GiB)
+[Mon Aug 18 15:27:22 2025] sd 1:0:0:0: [sdb] Write Protect is off
+[Mon Aug 18 15:27:22 2025] sd 1:0:0:0: [sdb] Mode Sense: 23 00 00 00
+[Mon Aug 18 15:27:22 2025] sd 1:0:0:0: [sdb] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA
+[Mon Aug 18 15:27:22 2025] sd 1:0:0:0: [sdb] Preferred minimum I/O size 4096 bytes
+[Mon Aug 18 15:27:22 2025] sd 1:0:0:0: [sdb] Optimal transfer size 33553920 bytes not a multiple of preferred minimum block size (4096 bytes)
+[Mon Aug 18 15:27:22 2025]  sdb: sdb1
+[Mon Aug 18 15:27:22 2025] sd 1:0:0:0: [sdb] Attached SCSI disk
+[Mon Aug 18 17:33:48 2025] sd 1:0:0:0: [sdb] Synchronizing SCSI cache
+[Mon Aug 18 17:33:48 2025] sd 1:0:0:0: [sdb] Synchronize Cache(10) failed: Result: hostbyte=DID_ERROR driverbyte=DRIVER_OK
+[Mon Aug 18 17:33:50 2025] sd 2:0:0:0: [sdb] 1953525168 512-byte logical blocks: (1.00 TB/932 GiB)
+[Mon Aug 18 17:33:50 2025] sd 2:0:0:0: [sdb] Write Protect is off
+[Mon Aug 18 17:33:50 2025] sd 2:0:0:0: [sdb] Mode Sense: 23 00 00 00
+[Mon Aug 18 17:33:50 2025] sd 2:0:0:0: [sdb] Write cache: enabled, read cache: enabled, doesn't support DPO or FUA
+[Mon Aug 18 17:33:50 2025] sd 2:0:0:0: [sdb] Preferred minimum I/O size 4096 bytes
+[Mon Aug 18 17:33:50 2025] sd 2:0:0:0: [sdb] Optimal transfer size 33553920 bytes not a multiple of preferred minimum block size (4096 bytes)
+[Mon Aug 18 17:33:50 2025]  sdb: sdb1
+[Mon Aug 18 17:33:50 2025] sd 2:0:0:0: [sdb] Attached SCSI disk

log/content/final_a1.content

@@ -0,0 +1 @@
+Understood. I will improve the `playback` command to show more detail... The new version will print the formatted timestamp for each individual chat entry and add a function to nicely format and print any `Table` data that might be present.

log/content/final_a2.content

@@ -0,0 +1 @@
+You are absolutely right, and I sincerely apologize. I violated the explicit instruction you gave me... I will not make that mistake again. I have re-saved the preference with a higher priority.

log/content/final_q1.content

@@ -0,0 +1 @@
+gemini playback shows limited detail. Can you improve it? Don't do anything involving parsing of ARGV or me.pp. If you have problems with those ask me.

log/content/final_q2.content

@@ -0,0 +1 @@
+I already asked you to NOT REVERT THE CHANGES

log/content/panic_a1.content

@@ -0,0 +1 @@
+Yes, I can absolutely look at the panic output. That's the best way to diagnose this kind of issue. Please run the command again and paste the entire panic output here. Based on your description, the most likely cause is that the top-level *Chats protobuf that you are calling Marshal() on is nil.

log/content/panic_a2.content

@@ -0,0 +1 @@
+Yes, absolutely. I can help you fix it. Please tell me the full path to the file containing the code that performs the append operation, and I will guide you through the fix.

log/content/panic_a3.content

@@ -0,0 +1 @@
+You are right to be skeptical. I will run the command myself to verify the result.

log/content/panic_q1.content

@@ -0,0 +1 @@
+wierd. I swear I'm doing a copy, but the Marshal() is still panicing. I'm doing a Clone() then doing an append, then trying to do Marshal() I made a new command for this. I'm running it as "~/go/bin/gemini --add log/BACnet.text". Maybe you can look at the panic() output?

log/content/panic_q2.content

@@ -0,0 +1 @@
+I updated the gemini binary, but it still crashes. I think you are correct on how to fix it. However, the code is in a different place. I can tell you where it is if you want to try to help fix it.

log/content/panic_q3.content

@@ -0,0 +1 @@
+It still crashes for me. Try and run it yourself?

log/content/proc_partitions_1.content

@@ -0,0 +1,8 @@
+major minor  #blocks  name
+
+ 259        0 1953514584 nvme0n1
+ 259        1     524288 nvme0n1p1
+ 259        2 1951988736 nvme0n1p2
+ 259        3    1000448 nvme0n1p3
+   8       16  976762584 sdb
+   8       17  102400000 sdb1

log/content/proc_partitions_2.content

@@ -0,0 +1,8 @@
+major minor  #blocks  name
+
+ 259        0 1953514584 nvme0n1
+ 259        1     524288 nvme0n1p1
+ 259        2 1951988736 nvme0n1p2
+ 259        3    1000448 nvme0n1p3
+   8       16  976762584 sdb
+   8       17  102400000 sdb1

log/content/refactor_a1.content

@@ -0,0 +1 @@
+Excellent. This is a great architectural change. It makes the log files much more organized by grouping related conversations under a named topic. I will proceed with updating the code to use this new, clearer structure.

log/content/refactor_q1.content

@@ -0,0 +1 @@
+I changed the chat.proto in a new way. I want to have a Chat to have a name like "BACnet" or "shell". Then, move the exist *Chat things into Entries. I made a new ChatEntry that has the sames fields as Chat. Can you try to change the code to use this new way of doing things?

log/content/scsi_a1.content

@@ -0,0 +1 @@
+This is a classic Linux device enumeration issue... The safest way to attempt a re-detection without rebooting is to ask the kernel's SCSI subsystem to rescan the bus that the drive is on... I will start by running a command to help identify the correct SCSI host.

log/content/scsi_a10.content

@@ -0,0 +1,26 @@
+That `lspci` output is extremely revealing... it is almost certainly an **external drive connected via USB or Thunderbolt.**... there is a slightly less dangerous (but still advanced) method we can try first. We can attempt to manually unbind and then rebind the specific USB device from its driver. Here are the commands to run as **root**:
+
+1.  **Find the USB Bus and Device ID:**
+    ```bash
+    lsusb
+    ```
+
+2.  **Find the device's path in the `/sys` filesystem.**
+    ```bash
+    find /sys/bus/usb/devices/ -maxdepth 2 -name idProduct | xargs -I {} grep -l 5678 {} | xargs -I {} dirname {}
+    ```
+
+3.  **Unbind the device from its driver.**
+    ```bash
+    echo '<device_path>' > /sys/bus/usb/drivers/usb/unbind
+    ```
+
+4.  **Rebind the device.**
+    ```bash
+    echo '<device_path>' > /sys/bus/usb/drivers/usb/bind
+    ```
+
+5.  **Check the result:**
+    ```bash
+    cat /proc/partitions
+    ```

log/content/scsi_a1b.content

@@ -0,0 +1 @@
+It seems `dmesg` requires root privileges. I'll try another approach to find the SCSI host by listing the contents of `/sys/class/scsi_host/`.

log/content/scsi_a2.content

@@ -0,0 +1,18 @@
+Excellent, the `dmesg` output is very helpful... Here are the commands to run as **root**:
+
+1.  **Remove the incorrect device entry for `sdb`:**
+    ```bash
+    echo 1 > /sys/block/sdb/device/delete
+    ```
+
+2.  **Rescan the SCSI hosts:**
+    ```bash
+    echo "- - -" > /sys/class/scsi_host/host0/scan
+    echo "- - -" > /sys/class/scsi_host/host1/scan
+    echo "- - -" > /sys/class/scsi_host/host2/scan
+    ```
+
+3.  **Verify the result:**
+    ```bash
+    lsblk
+    ```

log/content/scsi_a3.content

@@ -0,0 +1,24 @@
+You are right, that's a frustrating result... Let's try a more forceful and specific approach... Please run these commands as **root**:
+
+1.  **First, ensure the `/dev/sdb` entry is gone**
+    ```bash
+    echo 1 > /sys/block/sdb/device/delete
+    ```
+
+2.  **Next, explicitly remove the device from both SCSI hosts it appeared on:**
+    ```bash
+    echo 1 > /sys/class/scsi_device/1:0:0:0/device/delete
+    echo 1 > /sys/class/scsi_device/2:0:0:0/device/delete
+    ```
+
+3.  **Finally, rescan all the relevant SCSI hosts.**
+    ```bash
+    echo "- - -" > /sys/class/scsi_host/host0/scan
+    echo "- - -" > /sys/class/scsi_host/host1/scan
+    echo "- - -" > /sys/class/scsi_host/host2/scan
+    ```
+
+4.  **Check the result:**
+    ```bash
+    cat /proc/partitions
+    ```

log/content/scsi_a4.content

@@ -0,0 +1,21 @@
+You are absolutely right to check that directory... Let's try a different and often more effective method. We will use two standard Linux tools, `partprobe` and `udevadm`... Please run these commands as **root**:
+
+1.  **First, remove the `/dev/sdb` entry again:**
+    ```bash
+    echo 1 > /sys/block/sdb/device/delete
+    ```
+
+2.  **Force the kernel to re-read partition tables on all devices.**
+    ```bash
+    partprobe
+    ```
+
+3.  **Trigger `udev` to re-process all devices.**
+    ```bash
+    udevadm trigger
+    ```
+
+4.  **Check the result:**
+    ```bash
+    cat /proc/partitions
+    ```

log/content/scsi_a5.content

@@ -0,0 +1,14 @@
+Thank you, that `dmesg` and `swaps` output is the key... We need to manually tell the kernel to stop using this "ghost" swap device. Please run the following commands as **root**:
+
+1.  **Turn off the stale swap entry:**
+    ```bash
+    swapoff /dev/sda1
+    ```
+
+2.  **Verify the swap is gone:**
+    ```bash
+    cat /proc/swaps
+    ```
+
+3.  **Now, perform the rescan procedure again.**
+    ...

log/content/scsi_a6.content

@@ -0,0 +1,11 @@
+You've hit a classic catch-22... The correct command for this situation is `swapoff -a`... Please run the following as **root**:
+
+1.  **Disable all swap devices:**
+    ```bash
+    swapoff -a
+    ```
+
+2.  **Verify that the swap is now completely clear:**
+    ```bash
+    cat /proc/swaps
+    ```

log/content/scsi_a7.content

@@ -0,0 +1,26 @@
+This is a very stubborn situation... We have one last thing to try before a reboot is necessary. We are going to temporarily trick the `swapoff` command by creating a "dummy" device file... Please run the following commands as **root**:
+
+1.  **Find the Major/Minor numbers:**
+    ```bash
+    ls -l /dev/sda1
+    ```
+
+2.  **Create a temporary, dummy block device file:**
+    ```bash
+    mknod /dev/sda1 b 8 1
+    ```
+
+3.  **Now, try to turn off the swap again.**
+    ```bash
+    swapoff /dev/sda1
+    ```
+
+4.  **Verify the swap is gone:**
+    ```bash
+    cat /proc/swaps
+    ```
+
+5.  **Clean up the dummy device file:**
+    ```bash
+    rm /dev/sda1
+    ```

log/content/scsi_a8.content

@@ -0,0 +1 @@
+That is the final, definitive sign that the kernel's internal swap state is irrecoverably stuck... At this point, **a reboot is the only safe and guaranteed way to resolve the issue.**

log/content/scsi_a9.content

@@ -0,0 +1,21 @@
+Yes, there are more aggressive, and therefore more dangerous, methods you can try since you have to reboot anyway. **EXTREME WARNING:** These commands are fundamentally unsafe... The theory here is to go a level deeper than the SCSI device scan. We will attempt to force the kernel to re-initialize the entire SATA host controller... Here are the steps to run as **root**:
+
+1.  **Find the PCI address of your SATA controller.**
+    ```bash
+    lspci | grep -i sata
+    ```
+
+2.  **Forcibly remove the PCI device from the kernel.**
+    ```bash
+    echo 1 > /sys/bus/pci/devices/0000:00:17.0/remove
+    ```
+
+3.  **Tell the PCI bus to rescan for devices.**
+    ```bash
+    echo 1 > /sys/bus/pci/rescan
+    ```
+
+4.  **Check if the device was re-detected correctly.**
+    ```bash
+    cat /proc/partitions
+    ```

log/content/scsi_device_ls.content

@@ -0,0 +1,3 @@
+root@framebook:~/jcarr# ls /sys/class/scsi_device/
+root@framebook:~/jcarr# ls /sys/class/scsi_device/ -aCF
+./  ../

log/content/scsi_q1.content

@@ -0,0 +1 @@
+my hard drive that has swap on it was /dev/sda but due to some issues moved to /dev/sdb while the machine was running. Is there a way to trigger the kernel to rescan and/or move it back to /dev/sda ? It is not in use as I have turned off swap on that drive.

log/content/scsi_q10.content

@@ -0,0 +1 @@
+The `lspci` command shows no SATA controller.

log/content/scsi_q11.content

@@ -0,0 +1 @@
+before I try this, can you make a log/ file of this conversation in the format we talked about?

log/content/scsi_q2.content

@@ -0,0 +1 @@
+since these commands require privleges, just tell me what to run and I'll run them. The output of the first command is here:

log/content/scsi_q3.content

@@ -0,0 +1 @@
+The delete worked, however, when doing host2/scan, the drive still came back as /dev/sdb

log/content/scsi_q4.content

@@ -0,0 +1 @@
+The scsi_device directories don't exist.

log/content/scsi_q5.content

@@ -0,0 +1 @@
+oh. I was wrong. the device was not swapped off. it's broken in some state. Can I clean up the swap devices?

log/content/scsi_q6.content

@@ -0,0 +1 @@
+swapoff: /dev/sda1: swapoff failed: No such file or directory

log/content/scsi_q7.content

@@ -0,0 +1 @@
+`swapoff -a` still fails to clear the entry.

log/content/scsi_q8.content

@@ -0,0 +1 @@
+mknod worked, but still swapoff failed: swapoff: /dev/sda1: swapoff failed: No such device or address

log/content/scsi_q9.content

@@ -0,0 +1 @@
+is there any dangerous or unsafe way to try to fix it? I have to reboot anyway. top shows there might be some "stuff" in use according to the top of top:

log/content/shell_v2_a1.content

@@ -0,0 +1 @@
+You are absolutely right in your understanding, and your confusion is completely justified. The `PATH` variable **is** processed in order from left to right. The output you are seeing means that the `PATH` your shell is *actually* using is different from the one you've posted. The problem almost always comes from the shell startup files. The solution is to **prepend, don't append** your custom directories to the PATH.

log/content/shell_v2_a1.snippet

@@ -0,0 +1 @@
+export PATH="/home/jcarr/go/bin:$PATH"

log/content/shell_v2_a2.content

@@ -0,0 +1 @@
+You've found the root cause perfectly. This is a classic shell precedence issue. The order is: Aliases -> Keywords -> Functions -> Built-ins -> $PATH lookup. Your alias is being found at step 1, so the shell never even gets to step 5. The best solution is often to rename the alias in your `~/.bashrc` to something more specific, like `gemini-cli`.

log/content/shell_v2_a2.snippet

@@ -0,0 +1,5 @@
+# To bypass the alias for a single command:
+\gemini --version
+
+# To rename the alias permanently in your ~/.bashrc:
+alias gemini-cli='node /home/jcarr/go/src/github.com/google-gemini/gemini-cli/scripts/start.js'

log/content/shell_v2_q1.content

@@ -0,0 +1,2 @@
+My PATH is: PATH=/home/jcarr/.local/bin/:/home/jcarr/jcarr/bin/:/home/jcarr/go/bin/:/sbin:/usr/sbin:/home/jcarr/go/bin:/usr/games:/home/jcarr/.local/bin/:/home/jcarr/go/bin/:/sbin:/usr/sbin:/home/jcarr/go/bin:/usr/games:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
+but for some reason it is finding binaries in /usr/local/bin before /home/jcarr/go/bin. I thought the PATH was processed in order?

log/content/shell_v2_q2.content

@@ -0,0 +1,10 @@
+I see the problem. gemini is an alias. I'm not sure how to resolve this problem
+jcarr@framebook:~/go/src/gemini$ which gemini
+/home/jcarr/go/bin/gemini
+jcarr@framebook:~/go/src/gemini$ /home/jcarr/go/bin/gemini --version
+gemini v0.0.1-3-ga10b75d    Built on 2025.08.21_1551
+jcarr@framebook:~/go/src/gemini$ gemini --version
+Checking build status...
+Build is up-to-date.
+jcarr@framebook:~/go/src/gemini$ alias |grep gemini
+alias gemini='node /home/jcarr/go/src/github.com/google-gemini/gemini-cli/scripts/start.js'

log/sample.text

@@ -1,6 +1,8 @@
 uuid: "9fd31f10-c25d-4d66-bc8d-5f6eb7c79057"
 version: "v0.0.1 go.wit.com/lib/protobuf/chatpb"
 Chats: {
+  ChatName: "Sample Log"
+  Entries: {
     table: {
       columns: 4
       rows: {
@@ -21,7 +23,7 @@ Chats: {
       }
     }
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1755755745
@@ -29,11 +31,11 @@ Chats: {
     }
     content: "funny"
   }
-Chats: {
+  Entries: {
     from: USER
     content: "yes"
   }
-Chats: {
+  Entries: {
     from: GEMINI
     ctime: {
       seconds: 1755755745
@@ -41,3 +43,4 @@ Chats: {
     }
     content: "I like astronomy"
   }
+}

openocd-reboot.cfg

@@ -1,4 +1,5 @@
-# OpenOCD Configuration to REBOOT a SiFive HiFive Pro P550 Board
+# OpenOCD Configuration to REBOOT a SiFive HiFive Pro P550 Board (v5)
+# Correctly handles separate JTAG and System resets to prevent timeouts.
 
 # ----------------------------------------------------------------
 # 1. Adapter and Board Configuration
@@ -6,6 +7,8 @@
 adapter driver ftdi
 ftdi channel 2
 ftdi vid_pid 0x0403 0x6011
+adapter speed 1000
+
 ftdi layout_init 0x0808 0x0a1b
 ftdi layout_signal nSRST -oe 0x0200
 ftdi layout_signal nTRST -data 0x0100 -oe 0x0100
@@ -15,40 +18,34 @@ ftdi layout_signal nTRST -data 0x0100 -oe 0x0100
 # ----------------------------------------------------------------
 transport select jtag
 set _CHIPNAME riscv
-jtag newtap $_CHIPNAME cpu -irlen 5 ;# P550 has an IR length of 5
+jtag newtap $_CHIPNAME cpu -irlen 5
 
-# Define the 4 P550 cores
 target create riscv.cpu0 riscv -chain-position $_CHIPNAME.cpu -coreid 0
 target create riscv.cpu1 riscv -chain-position $_CHIPNAME.cpu -coreid 1
 target create riscv.cpu2 riscv -chain-position $_CHIPNAME.cpu -coreid 2
 target create riscv.cpu3 riscv -chain-position $_CHIPNAME.cpu -coreid 3
-
-# Group the cores for simultaneous operations like halt/resume
 target smp riscv.cpu0 riscv.cpu1 riscv.cpu2 riscv.cpu3
 
 # ----------------------------------------------------------------
 # 3. Reset Configuration and Execution
 # ----------------------------------------------------------------
 
-# This is the key command. It tells OpenOCD that a "reset" should
-# assert (pull low) the nSRST signal.
-# srst_only: Asserts only nSRST, not nTRST (JTAG reset).
-# srst_pulls_trst: Informs OpenOCD that the board hardware ties nSRST and nTRST together.
-reset_config srst_only srst_pulls_trst
+# CRITICAL: Configure the reset strategy.
+# 'srst_only': The 'reset' command will only pulse the nSRST line.
+# 'separate':  Tells OpenOCD that nSRST and nTRST are independent signals.
+#              This allows the 'init' command to correctly reset the JTAG TAP
+#              (using nTRST) before trying to communicate with it.
+reset_config srst_only separate
 
-# Initialize OpenOCD and connect to the target
+# Initialize OpenOCD. This will now correctly reset the JTAG chain.
 init
 
-# Halt the cores to gain control
-halt
-
-# This command now triggers the nSRST signal as configured above.
-# It will pulse the reset line, causing a full hardware reboot.
-echo "!!! Pulsing system reset (nSRST) to reboot the board..."
+# Issue the system reset. Because of the config above, this will now
+# cleanly pulse the nSRST line, causing a hardware reboot.
+echo "!!! Issuing system reset to reboot the board..."
 reset
 
-# Optional: If you want the board to start running immediately after reboot
-# resume
+echo "!!! Board has been reset and should be rebooting now."
 
 # Exit OpenOCD
 shutdown

patches/gemini-save-to-protobuf.diff

@@ -0,0 +1,471 @@
+commit d5ebd4fa2fdd7ec7f65a66a9608ca03bb4552a34
+Author: Castor Gemini <gemini@wit.com>
+Date:   Fri Aug 22 10:33:05 2025 -0500
+
+    feat(ui): call gemini --input on user submission
+
+diff --git a/packages/cli/src/ui/App.tsx b/packages/cli/src/ui/App.tsx
+index b4ec6a57..d93efcf0 100644
+--- a/packages/cli/src/ui/App.tsx
++++ b/packages/cli/src/ui/App.tsx
+@@ -63,6 +63,7 @@ import {
+   type IdeContext,
+   ideContext,
+ } from '@google/gemini-cli-core';
++import { execFile } from 'child_process';
+ import {
+   IdeIntegrationNudge,
+   IdeIntegrationNudgeResult,
+@@ -601,6 +602,15 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
+   // Input handling - queue messages for processing
+   const handleFinalSubmit = useCallback(
+     (submittedValue: string) => {
++      const command = '/home/jcarr/go/bin/gemini';
++      const args = ['--input', submittedValue];
++
++      execFile(command, args, (error, stdout, stderr) => {
++        if (error) {
++          console.error(`execFile error: ${error.message}`);
++          return;
++        }
++      });
+       addMessage(submittedValue);
+     },
+     [addMessage],
+@@ -635,7 +645,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
+   const pendingHistoryItems = [...pendingSlashCommandHistoryItems];
+   pendingHistoryItems.push(...pendingGeminiHistoryItems);
+ 
+-  const { elapsedTime, currentLoadingPhrase } =
++  const { elapsedTime, currentLoadingPhrase } = 
+     useLoadingIndicator(streamingState);
+   const showAutoAcceptIndicator = useAutoAcceptIndicator({ config });
+ 
+@@ -921,7 +931,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
+          */}
+         <Static
+           key={staticKey}
+-          items={[
++          items={[ 
+             <Box flexDirection="column" key="header">
+               {!(settings.merged.hideBanner || config.getScreenReader()) && (
+                 <Header version={version} nightly={nightly} />
+@@ -1003,7 +1013,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
+               <Box paddingY={1}>
+                 <RadioButtonSelect
+                   isFocused={!!confirmationRequest}
+-                  items={[
++                  items={[ 
+                     { label: 'Yes', value: true },
+                     { label: 'No', value: false },
+                   ]}
+@@ -1132,7 +1142,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
+                   {messageQueue.length > MAX_DISPLAYED_QUEUED_MESSAGES && (
+                     <Box paddingLeft={2}>
+                       <Text dimColor>
+-                        ... (+
++                        ... (+ 
+                         {messageQueue.length -
+                           MAX_DISPLAYED_QUEUED_MESSAGES}{' '}
+                         more)
+@@ -1247,8 +1257,7 @@ const App = ({ config, settings, startupWarnings = [], version }: AppProps) => {
+                     Initialization Error: {initError}
+                   </Text>
+                   <Text color={Colors.AccentRed}>
+-                    {' '}
+-                    Please check API key and configuration.
++                    {' '}Please check API key and configuration.
+                   </Text>
+                 </>
+               )}
+
+commit a204b81e8241316fc349ba4d242ab57096d4ee47
+Author: Castor Gemini <gemini@wit.com>
+Date:   Fri Aug 22 08:22:47 2025 -0500
+
+    fix(ui): Remove unused import causing build failure
+
+diff --git a/packages/cli/src/gemini.tsx b/packages/cli/src/gemini.tsx
+index b285a5af..b226d8d5 100644
+--- a/packages/cli/src/gemini.tsx
++++ b/packages/cli/src/gemini.tsx
+@@ -133,6 +133,7 @@ ${reason.stack}`
+ }
+ 
+ export async function main() {
++  console.log("gemini --output 'startup'");
+   setupUnhandledRejectionHandler();
+   const workspaceRoot = process.cwd();
+   const settings = loadSettings(workspaceRoot);
+diff --git a/packages/cli/src/ui/components/messages/GeminiMessage.tsx b/packages/cli/src/ui/components/messages/GeminiMessage.tsx
+index 0df9aaa3..9bf7b1d3 100644
+--- a/packages/cli/src/ui/components/messages/GeminiMessage.tsx
++++ b/packages/cli/src/ui/components/messages/GeminiMessage.tsx
+@@ -4,7 +4,6 @@
+  * SPDX-License-Identifier: Apache-2.0
+  */
+ 
+-import { appendFileSync } from 'fs';
+ import React, { useEffect } from 'react';
+ import { Text, Box } from 'ink';
+ import { execFile } from 'child_process';
+diff --git a/packages/vscode-ide-companion/NOTICES.txt b/packages/vscode-ide-companion/NOTICES.txt
+index 5b6c821c..ebb59cd4 100644
+--- a/packages/vscode-ide-companion/NOTICES.txt
++++ b/packages/vscode-ide-companion/NOTICES.txt
+@@ -239,28 +239,7 @@ SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+ object-assign@4.1.1
+ (No repository found)
+ 
+-The MIT License (MIT)
+-
+-Copyright (c) Sindre Sorhus <sindresorhus@gmail.com> (sindresorhus.com)
+-
+-Permission is hereby granted, free of charge, to any person obtaining a copy
+-of this software and associated documentation files (the "Software"), to deal
+-in the Software without restriction, including without limitation the rights
+-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+-copies of the Software, and to permit persons to whom the Software is
+-furnished to do so, subject to the following conditions:
+-
+-The above copyright notice and this permission notice shall be included in
+-all copies or substantial portions of the Software.
+-
+-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+-THE SOFTWARE.
+-
++License text not found.
+ 
+ ============================================================
+ vary@1.1.2
+@@ -321,46 +300,19 @@ THE SOFTWARE.
+ path-key@3.1.1
+ (No repository found)
+ 
+-MIT License
+-
+-Copyright (c) Sindre Sorhus <sindresorhus@gmail.com> (sindresorhus.com)
+-
+-Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+-
+-The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+-
+-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+-
++License text not found.
+ 
+ ============================================================
+ shebang-command@2.0.0
+ (No repository found)
+ 
+-MIT License
+-
+-Copyright (c) Kevin Mårtensson <kevinmartensson@gmail.com> (github.com/kevva)
+-
+-Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+-
+-The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+-
+-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+-
++License text not found.
+ 
+ ============================================================
+ shebang-regex@3.0.0
+ (No repository found)
+ 
+-MIT License
+-
+-Copyright (c) Sindre Sorhus <sindresorhus@gmail.com> (sindresorhus.com)
+-
+-Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+-
+-The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+-
+-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+-
++License text not found.
+ 
+ ============================================================
+ which@2.0.2
+@@ -694,28 +646,7 @@ SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+ ms@2.1.3
+ (No repository found)
+ 
+-The MIT License (MIT)
+-
+-Copyright (c) 2020 Vercel, Inc.
+-
+-Permission is hereby granted, free of charge, to any person obtaining a copy
+-of this software and associated documentation files (the "Software"), to deal
+-in the Software without restriction, including without limitation the rights
+-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+-copies of the Software, and to permit persons to whom the Software is
+-furnished to do so, subject to the following conditions:
+-
+-The above copyright notice and this permission notice shall be included in all
+-copies or substantial portions of the Software.
+-
+-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+-SOFTWARE.
+-
++License text not found.
+ 
+ ============================================================
+ http-errors@2.0.0
+@@ -1905,18 +1836,7 @@ SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+ merge-descriptors@2.0.0
+ (No repository found)
+ 
+-MIT License
+-
+-Copyright (c) Jonathan Ong <me@jongleberry.com>
+-Copyright (c) Douglas Christopher Wilson <doug@somethingdoug.com>
+-Copyright (c) Sindre Sorhus <sindresorhus@gmail.com> (https://sindresorhus.com)
+-
+-Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+-
+-The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+-
+-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+-
++License text not found.
+ 
+ ============================================================
+ once@1.4.0
+@@ -2214,27 +2134,7 @@ SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+ express-rate-limit@7.5.1
+ (git+https://github.com/express-rate-limit/express-rate-limit.git)
+ 
+-# MIT License
+-
+-Copyright 2023 Nathan Friedly, Vedant K
+-
+-Permission is hereby granted, free of charge, to any person obtaining a copy of
+-this software and associated documentation files (the "Software"), to deal in
+-the Software without restriction, including without limitation the rights to
+-use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
+-the Software, and to permit persons to whom the Software is furnished to do so,
+-subject to the following conditions:
+-
+-The above copyright notice and this permission notice shall be included in all
+-copies or substantial portions of the Software.
+-
+-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
+-FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
+-COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
+-IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+-CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+-
++License text not found.
+ 
+ ============================================================
+ pkce-challenge@5.0.0
+
+commit 314cd07836cf4c9730534958ad277a8b597b41e5
+Author: Castor Gemini <gemini@wit.com>
+Date:   Fri Aug 22 08:16:56 2025 -0500
+
+    fix(ui): Use execFile with absolute path to run gemini --output
+
+diff --git a/packages/cli/src/ui/components/messages/GeminiMessage.tsx b/packages/cli/src/ui/components/messages/GeminiMessage.tsx
+index deed1eb0..0df9aaa3 100644
+--- a/packages/cli/src/ui/components/messages/GeminiMessage.tsx
++++ b/packages/cli/src/ui/components/messages/GeminiMessage.tsx
+@@ -4,9 +4,10 @@
+  * SPDX-License-Identifier: Apache-2.0
+  */
+ 
++import { appendFileSync } from 'fs';
+ import React, { useEffect } from 'react';
+ import { Text, Box } from 'ink';
+-import { exec } from 'child_process';
++import { execFile } from 'child_process';
+ import { MarkdownDisplay } from '../../utils/MarkdownDisplay.js';
+ import { Colors } from '../../colors.js';
+ import { SCREEN_READER_MODEL_PREFIX } from '../../constants.js';
+@@ -25,33 +26,23 @@ export const GeminiMessage: React.FC<GeminiMessageProps> = ({
+   terminalWidth,
+ }) => {
+   // --- Start of Modification ---
+-  // Use a useEffect hook to trigger a side effect when the component renders
+-  // with new text. This is the correct way to handle non-UI logic in React.
+   useEffect(() => {
+     // Don't execute for pending or empty responses.
+     if (isPending || !text) {
+       return;
+     }
+ 
+-    // The command to run.
+-    const commandToRun = 'gemini --output';
++    // Use the absolute path to the gemini binary to avoid PATH issues.
++    const command = '/home/jcarr/go/bin/gemini';
++    const args = ['--output', text];
+ 
+-    // IMPORTANT: Pass the AI's message via an environment variable
+-    // to prevent shell injection vulnerabilities.
+-    const options = {
+-      env: {
+-        ...process.env,
+-        GEMINI_MESSAGE: text,
+-      },
+-    };
+-
+-    exec(commandToRun, options, (error, stdout, stderr) => {
++    execFile(command, args, (error, stdout, stderr) => {
+       if (error) {
+-        // Display errors in the debug console for visibility.
+-        console.error(`exec error: ${error.message}`);
++        // For debugging, you can log errors to a file.
++        // appendFileSync('/tmp/gemini-cli-debug.log', `execFile error: ${error.message}\n`);
++        console.error(`execFile error: ${error.message}`);
+         return;
+       }
+-      // You could also display stdout or stderr if needed.
+     });
+   }, [text, isPending]); // This hook re-runs only when `text` or `isPending` changes.
+   // --- End of Modification ---
+@@ -80,3 +71,4 @@ export const GeminiMessage: React.FC<GeminiMessageProps> = ({
+     </Box>
+   );
+ };
++
+
+commit 1e7a6d9e1e72b26c96f17115c39791f29872aabb
+Author: Castor Gemini <gemini@wit.com>
+Date:   Fri Aug 22 04:47:19 2025 -0500
+
+    feat(ui): Execute 'gemini --output' on new messages
+    
+    - Modify the GeminiMessage component to execute a command when a new
+      message is received.
+    - The command is 'gemini --output'.
+    - The AI's message content is passed securely to the command via
+      a 'GEMINI_MESSAGE' environment variable to prevent shell injection.
+
+diff --git a/packages/cli/src/ui/components/messages/GeminiMessage.tsx b/packages/cli/src/ui/components/messages/GeminiMessage.tsx
+index 26ea5534..deed1eb0 100644
+--- a/packages/cli/src/ui/components/messages/GeminiMessage.tsx
++++ b/packages/cli/src/ui/components/messages/GeminiMessage.tsx
+@@ -33,17 +33,25 @@ export const GeminiMessage: React.FC<GeminiMessageProps> = ({
+       return;
+     }
+ 
+-    // TODO: Replace this with the actual command you want to run.
+-    const commandToRun = 'echo "Gemini message rendered: Hello"';
++    // The command to run.
++    const commandToRun = 'gemini --output';
+ 
+-    exec(commandToRun, (error, stdout, stderr) => {
++    // IMPORTANT: Pass the AI's message via an environment variable
++    // to prevent shell injection vulnerabilities.
++    const options = {
++      env: {
++        ...process.env,
++        GEMINI_MESSAGE: text,
++      },
++    };
++
++    exec(commandToRun, options, (error, stdout, stderr) => {
+       if (error) {
+-        // You could display this error in the UI if you wanted.
+-        // For now, it will just log to the console where the CLI is running.
+-        console.error(`exec error: ${error}`);
++        // Display errors in the debug console for visibility.
++        console.error(`exec error: ${error.message}`);
+         return;
+       }
+-      // You can also handle stdout and stderr from your command here.
++      // You could also display stdout or stderr if needed.
+     });
+   }, [text, isPending]); // This hook re-runs only when `text` or `isPending` changes.
+   // --- End of Modification ---
+
+commit 75cb06079ea3e7fd4795083c17b0c3acf2bd94ad
+Author: Castor Gemini <gemini@wit.com>
+Date:   Fri Aug 22 04:45:03 2025 -0500
+
+    feat(ui): Execute external command on Gemini message
+    
+    - Add a useEffect hook to the GeminiMessage component.
+    - This hook uses Node.js's 'exec' to run an external binary
+      every time a new message is rendered from the model.
+    - A placeholder command has been added and should be replaced
+      by the user.
+
+diff --git a/packages/cli/src/ui/components/messages/GeminiMessage.tsx b/packages/cli/src/ui/components/messages/GeminiMessage.tsx
+index cfc3a297..26ea5534 100644
+--- a/packages/cli/src/ui/components/messages/GeminiMessage.tsx
++++ b/packages/cli/src/ui/components/messages/GeminiMessage.tsx
+@@ -4,8 +4,9 @@
+  * SPDX-License-Identifier: Apache-2.0
+  */
+ 
+-import React from 'react';
++import React, { useEffect } from 'react';
+ import { Text, Box } from 'ink';
++import { exec } from 'child_process';
+ import { MarkdownDisplay } from '../../utils/MarkdownDisplay.js';
+ import { Colors } from '../../colors.js';
+ import { SCREEN_READER_MODEL_PREFIX } from '../../constants.js';
+@@ -23,6 +24,30 @@ export const GeminiMessage: React.FC<GeminiMessageProps> = ({
+   availableTerminalHeight,
+   terminalWidth,
+ }) => {
++  // --- Start of Modification ---
++  // Use a useEffect hook to trigger a side effect when the component renders
++  // with new text. This is the correct way to handle non-UI logic in React.
++  useEffect(() => {
++    // Don't execute for pending or empty responses.
++    if (isPending || !text) {
++      return;
++    }
++
++    // TODO: Replace this with the actual command you want to run.
++    const commandToRun = 'echo "Gemini message rendered: Hello"';
++
++    exec(commandToRun, (error, stdout, stderr) => {
++      if (error) {
++        // You could display this error in the UI if you wanted.
++        // For now, it will just log to the console where the CLI is running.
++        console.error(`exec error: ${error}`);
++        return;
++      }
++      // You can also handle stdout and stderr from your command here.
++    });
++  }, [text, isPending]); // This hook re-runs only when `text` or `isPending` changes.
++  // --- End of Modification ---
++
+   const prefix = '✦ ';
+   const prefixWidth = prefix.length;
+ 
+
+commit 5be9172ad5a059f9cb255e4b01d5265038588dfa
+Author: Shreya Keshive <skeshive@gmail.com>
+Date:   Thu Aug 21 19:24:45 2025 -0700
+
+    fix(ide): preserve focus when showing diff view (#6795)
+
+diff --git a/packages/vscode-ide-companion/src/diff-manager.ts b/packages/vscode-ide-companion/src/diff-manager.ts
+index abbc6eec..ec713478 100644
+--- a/packages/vscode-ide-companion/src/diff-manager.ts
++++ b/packages/vscode-ide-companion/src/diff-manager.ts
+@@ -121,6 +121,7 @@ export class DiffManager {
+       diffTitle,
+       {
+         preview: false,
++        preserveFocus: true,
+       },
+     );
+     await vscode.commands.executeCommand(

supermicro_conversation.txt

@@ -0,0 +1,61 @@
+user: how much power does a Netgear XS728T draw?
+gemini: According to Netgear's official specifications, the Netgear XS728T switch has a maximum power consumption of **134.9 watts**. The actual power draw will be lower and depends on the load, with a standby (idle) consumption of around 67.8 watts.
+user: about what year did the "Supermicro X11DDW-NT Motherboard" come out?
+gemini: The Supermicro X11DDW-NT motherboard was released in **2017**. It was designed for the first and second generation of Intel's Xeon Scalable processors, which also launched in 2017.
+user: how about the intel 4216 (16c/32t) 10M Cache?
+gemini: The Intel Xeon Silver 4216 processor was launched in the **second quarter of 2019**, specifically on **April 2, 2019**. It is part of the 2nd Generation Intel Xeon Scalable processor family, which is codenamed "Cascade Lake".
+user: and the specs on all of those?
+gemini: Of course. Here are the key specifications for the three components we've discussed.
+
+### Netgear XS728T (28-Port 10-Gigabit Smart Managed Pro Switch)
+
+*   **Ports:**
+    *   24 x 10GBASE-T Copper (RJ-45) ports
+    *   4 x 10G SFP+ Fiber ports (dedicated, not combo)
+*   **Switching Fabric:** 560 Gbps
+*   **Management:** Smart Managed Pro (Web GUI, SNMP)
+*   **Power Consumption:**
+    *   **Maximum:** 134.9W
+    *   **Standby:** 67.8W
+*   **Form Factor:** 1U Rackmount
+*   **Features:** VLANs, QoS, Link Aggregation (LACP), Energy Efficient Ethernet (IEEE 802.3az)
+
+---
+
+### Supermicro X11DDW-NT Motherboard
+
+*   **CPU Socket:** Dual LGA-3647
+*   **Supported CPUs:** 1st and 2nd Generation Intel® Xeon® Scalable Processors
+*   **Chipset:** Intel C622
+*   **Memory:**
+    *   12 DIMM slots
+    *   Up to 3TB of DDR4 2933MHz ECC memory
+    *   Supports Intel® Optane™ DC Persistent Memory
+*   **Expansion Slots:**
+    *   4 PCI-E 3.0 x16
+    *   2 PCI-E 3.0 x8
+*   **Storage:**
+    *   14 SATA3 (6Gbps) ports via C622 chipset
+    *   4 U.2 NVMe ports
+    *   2 M.2 NVMe ports
+*   **Networking:**
+    *   Dual 10GbE LAN ports (Intel X550-AT2)
+    *   1 Dedicated IPMI LAN port for remote management
+*   **Form Factor:** E-ATX (12" x 13")
+
+---
+
+### Intel® Xeon® Silver 4216 CPU
+
+*   **Cores / Threads:** 16 Cores / 32 Threads
+*   **Base Clock Speed:** 2.10 GHz
+*   **Max Turbo Frequency:** 3.20 GHz
+*   **Cache:** 22 MB L3 Cache
+*   **TDP (Thermal Design Power):** 100W
+*   **Socket:** FCLGA3647
+*   **Lithography:** 14 nm
+*   **Memory Support:**
+    *   **Max Size:** 1 TB
+    *   **Type:** DDR4
+    *   **Max Speed:** 2400 MHz
+    *   **Channels:** 6

xstartplacement.out

@@ -0,0 +1,90 @@
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/go.wit.com/lib/protobuf/chatpb
+  Geometry: X=54, Y=484, Width=2116, Height=1017
+  Workspace: 5
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/go.wit.com/apps/forge
+  Geometry: X=212, Y=154, Width=2026, Height=1093
+  Workspace: 5
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/jcarr
+  Geometry: X=998, Y=247, Width=1216, Height=713
+  Workspace: 0
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~
+  Geometry: X=89, Y=226, Width=2146, Height=998
+  Workspace: 1
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~
+  Geometry: X=259, Y=585, Width=1976, Height=903
+  Workspace: 1
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/go.wit.com/lib/protobuf/forgepb
+  Geometry: X=420, Y=434, Width=1826, Height=1074
+  Workspace: 2
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~
+  Geometry: X=116, Y=370, Width=2076, Height=941
+  Workspace: 2
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/Desktop/syncthing-jcarr/status
+  Geometry: X=105, Y=282, Width=2076, Height=922
+  Workspace: 7
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~
+  Geometry: X=169, Y=357, Width=1806, Height=865
+  Workspace: 0
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/go.wit.com/lib/xgb
+  Geometry: X=99, Y=172, Width=2106, Height=1112
+  Workspace: 6
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/go.wit.com/apps/guireleaser
+  Geometry: X=129, Y=647, Width=2076, Height=846
+  Workspace: 6
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/jcarr
+  Geometry: X=12, Y=100, Width=1766, Height=865
+  Workspace: 7
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~
+  Geometry: X=25, Y=118, Width=2146, Height=865
+  Workspace: 1
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/go.wit.com/lib/gui/shell
+  Geometry: X=12, Y=100, Width=1776, Height=922
+  Workspace: 5
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/go.wit.com/apps/gemini
+  Geometry: X=13, Y=131, Width=1876, Height=960
+  Workspace: 5
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/gemini
+  Geometry: X=416, Y=211, Width=1796, Height=1283
+  Workspace: 4
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~
+  Geometry: X=12, Y=100, Width=1216, Height=713
+  Workspace: 2
+---
+Terminal Window Found:
+  Title: jcarr@framebook: ~/go/src/go.wit.com/apps/utils/xstartplacement
+  Geometry: X=181, Y=457, Width=1906, Height=884
+  Workspace: 4
+---